halophFGD

Basic Information

Locus ID: Ag3G01340

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Mitogen-activated protein kinase kinase kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	74891999	74898964	+	Ag3G01340

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.51	64,255.43 Da	38.13	82.20	-0.46

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00069	Protein kinase domain	308	556	5.5E-68	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	292	569	1.75E-84	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	297	388	5.8E-20	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	391	576	1.7E-58	-
SMART	SM00220	serkin_6	307	556	1.0E-93	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	307	556	50.505741	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	426	438	-	IPR008271
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	313	335	-	IPR017441
PRINTS	PR00109	Tyrosine kinase catalytic domain signature	482	504	1.2E-10	IPR001245
PRINTS	PR00109	Tyrosine kinase catalytic domain signature	463	473	1.2E-10	IPR001245
PRINTS	PR00109	Tyrosine kinase catalytic domain signature	525	547	1.2E-10	IPR001245
PRINTS	PR00109	Tyrosine kinase catalytic domain signature	385	398	1.2E-10	IPR001245
PRINTS	PR00109	Tyrosine kinase catalytic domain signature	420	438	1.2E-10	IPR001245
MobiDBLite	mobidb-lite	consensus disorder prediction	233	291	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	251	291	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	236	250	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K13414 (mitogen-activated protein kinase kinase kinase 1 [EC:2.7.11.25])

Pathway:

ko04016 (MAPK signaling pathway - plant) map04016 (MAPK signaling pathway - plant) ko04626 (Plant-pathogen interaction) map04626 (Plant-pathogen interaction)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G08500.1	MAPK/ERK kinase kinase 1. Encodes a member of the A1 subgroup of the MEKK (MAPK/ERK kinase kinase) family. MEKK is another name for Mitogen-Activated Protein Kinase Kinase Kinase (MAPKKK or MAP3K). This subgroup has four members: At4g08500 (MEKK1, also known as ARAKIN, MAP3Kb1, MAPKKK8), At4g08480 (MEKK2, also known as MAP3Kb4, MAPKKK9), At4g08470 (MEKK3, also known as MAP3Kb3, MAPKKK10) and At4g12020 (MEKK4, also known as MAP3Kb5, MAPKKK11, WRKY19). Nomenclatures for mitogen-activated protein kinases are described in Trends in Plant Science 2002, 7(7):301. Mediates cold, salt, cadmium and wounding stress signalling. Phosphorylates MEK1.
RefSeq	XP_017247661.1	PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Daucus carota subsp. sativus]
Swiss-Prot	Q39008	Mitogen-activated protein kinase kinase kinase 1 OS=Arabidopsis thaliana OX=3702 GN=MEKK1 PE=1 SV=2
TrEMBL	A0A165X1K0	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014793 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	28.06456	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	19.93527	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	24.457994	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	24.34713	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	24.265694	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	36.490055	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	24.838871	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	32.605915	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	53.574375	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	51.993603	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	53.691177	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	39.140911	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	49.388962	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	42.012463	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	35.121971	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	39.879269	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	29.514103	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	46.589405	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	40.036037	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	59.098656	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	55.043053	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	39.149559	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	34.053665	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	36.920525	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	43.690845	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	34.237431	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	31.924223	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	28.932426	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	32.056404	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	22.222721		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	23.964987		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	23.853155		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	64.740883		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	42.572807		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	68.127609		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	46.036419		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	29.298626		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	37.409935		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	32.978718	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	48.354076	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	30.599768	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	133.870804	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	118.460846	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	99.87851	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	83.900574	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	115.192894	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	73.3489	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	27.616344	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	27.708418	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	30.413212	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg12145, jg26392, jg6474, jg6475
Aizoaceae	Mesembryanthemum crystallinum	1	gene_1518
Amaranthaceae	Atriplex hortensis	2	Ah006957, Ah022601
Amaranthaceae	Beta vulgaris	1	BVRB_1g000400
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg4097, Sbi_jg49706
Amaranthaceae	Salicornia europaea	1	Seu_jg5550
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00022015
Amaranthaceae	Suaeda glauca	2	Sgl10494, Sgl15741
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000013373, gene:ENSEOMG00000035066 ... gene:ENSEOMG00000047882
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.1AG0000450, CQ.Regalona.r1.2BG0028550
Anacardiaceae	Pistacia vera	2	pistato.v30040260, pistato.v30105690
Apiaceae	Apium graveolens	2	Ag3G01340, Ag3G01758
Arecaceae	Cocos nucifera	3	COCNU_02G006550, scaffold001259G000100 ... scaffold024428G000020
Arecaceae	Phoenix dactylifera	4	gene-LOC103696066, gene-LOC103697029, gene-LOC103715246 ... gene-LOC113462388
Asparagaceae	Asparagus officinalis	1	AsparagusV1_03.1451.V1.1
Asteraceae	Flaveria trinervia	6	Ftri15G01769, Ftri18G16623, Ftri1G16228, Ftri4G16123 ... FtriNA11441, FtriNA25302
Brassicaceae	Arabidopsis thaliana	3	AT4G08470.1, AT4G08480.1, AT4G08500.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10028523m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp6g09370.v2.2, Sp6g09410.v2.2
Brassicaceae	Brassica nigra	5	BniB01g036680.2N, BniB04g055460.2N, BniB08g034580.2N ... BniB08g039900.2N, BniB08g054740.2N
Casuarinaceae	Casuarina equisetifolia	6	Ceq04G0014, Ceq09G0758, Ceq09G1888, Ceq09G1891, Ceq09G1893 ... Ceq09G1894
Casuarinaceae	Casuarina glauca	6	Cgl04G0034, Cgl04G0036, Cgl04G0950, Cgl09G0818, Cgl09G2065 ... Cgl09G2066
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g01890, gene.Cymno03g12680, gene.Cymno05g09900
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate05g04180, gene.Thate06g16650
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-12318, nbisL1-mrna-12353, nbisL1-mrna-1662
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG06.971, evm.TU.LG08.1300
Plantaginaceae	Plantago ovata	2	Pov_00021755, Pov_00039897
Plumbaginaceae	Limonium bicolor	3	Lb4G23355, Lb5G27546, Lb6G31227
Poaceae	Echinochloa crus-galli	9	AH01.4269, AH01.911, AH07.3626, BH01.1041, BH01.4575 ... BH07.3437, CH01.1090, CH01.4879, CH07.3507
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_2BG0202770, gene-QOZ80_3AG0219710 ... gene-QOZ80_3AG0241920, gene-QOZ80_3BG0264890, gene-QOZ80_3BG0286180
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.4HG0336340.1, HORVU.MOREX.r3.4HG0390270.1 ... HORVU.MOREX.r3.6HG0618820.1
Poaceae	Lolium multiflorum	4	gene-QYE76_006224, gene-QYE76_025691, gene-QYE76_062779 ... gene-QYE76_069142
Poaceae	Oryza coarctata	7	Oco03G022840, Oco04G023470, Oco05G008790, Oco05G021180 ... Oco06G009130, Oco06G022040, Oco07G002750
Poaceae	Oryza sativa	3	LOC_Os02g53040.1, LOC_Os03g15570.1, LOC_Os03g49640.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G111500, gene-BS78_01G409600 ... gene-BS78_04G289700
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0102135, Pt_Chr0102161, Pt_Chr0104796
Poaceae	Sporobolus alterniflorus	8	Chr01G030310, Chr04G007150, Chr04G026610, Chr07G004470 ... Chr07G025600, Chr12G009290, Chr12G030010, Chr15G002530
Poaceae	Thinopyrum elongatum	4	Tel4E01G076000, Tel4E01G379200, Tel6E01G576500 ... Tel6E01G578400
Poaceae	Triticum dicoccoides	6	gene_TRIDC4AG011970, gene_TRIDC4AG042420 ... gene_TRIDC4BG006560, gene_TRIDC4BG038440, gene_TRIDC6AG049110, gene_TRIDC6BG057520
Poaceae	Triticum aestivum	9	TraesCS4A02G087700.1, TraesCS4A02G272500.1 ... TraesCS4B02G041600.1, TraesCS4B02G216700.1, TraesCS4D02G038900.1, TraesCS4D02G217000.1, TraesCS6A02G327500.1, TraesCS6B02G358800.1, TraesCS6D02G307100.1
Poaceae	Zea mays	5	Zm00001eb011480_P001, Zm00001eb054290_P004 ... Zm00001eb193510_P003, Zm00001eb216720_P001, Zm00001eb398160_P001
Poaceae	Zoysia japonica	5	nbis-gene-14761, nbis-gene-15861, nbis-gene-2173 ... nbis-gene-3833, nbis-gene-8579
Poaceae	Zoysia macrostachya	5	Zma_g14517, Zma_g1587, Zma_g2991, Zma_g3983, Zma_g681
Portulacaceae	Portulaca oleracea	3	evm.TU.LG04.1957, evm.TU.LG04.3558, evm.TU.LG06.377
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g21660, gene.Posoc02g31040
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_2_RagTag.1595, evm.TU.Scaffold_7_RagTag.1052 ... evm.TU.Scaffold_8_RagTag.682
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-18791, nbisL1-mrna-9554
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-20407, nbisL1-mrna-522, nbisL1-mrna-6611
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-18231, nbisL1-mrna-18982, nbisL1-mrna-6875
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000002l.799, evm.TU.utg000009l.352 ... evm.TU.utg000018l.558
Rhizophoraceae	Kandelia obovata	3	Maker00003752, Maker00005734, Maker00010751
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-2784, nbisL1-mrna-2953, nbisL1-mrna-8174
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-20365, nbisL1-mrna-21818, nbisL1-mrna-9889
Salicaceae	Populus euphratica	4	populus_peu14682, populus_peu24023, populus_peu24025 ... populus_peu32355
Solanaceae	Lycium barbarum	2	gene-LOC132598733, gene-LOC132620375
Solanaceae	Solanum chilense	1	SOLCI004537200
Solanaceae	Solanum pennellii	2	gene-LOC107007880, gene-LOC107026093
Tamaricaceae	Reaumuria soongarica	1	STRG.9633_chr06_-
Tamaricaceae	Tamarix chinensis	1	TC09G1804
Zosteraceae	Zostera marina	2	Zosma02g16950.v3.1, Zosma03g20140.v3.1