Basic Information
Locus ID:
Ag3G01323
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Bacterial extracellular solute-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 73311395 | 73317906 | - | Ag3G01323 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.94 | 62,399.20 Da | 53.59 | 92.91 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13661 | PBP2_PotD_PotF_like_1 | 155 | 520 | 5.99966E-151 | - |
| Pfam | PF13343 | Bacterial extracellular solute-binding protein | 214 | 470 | 2.3E-31 | - |
| SUPERFAMILY | SSF53850 | Periplasmic binding protein-like II | 156 | 517 | 1.14E-39 | - |
| Gene3D | G3DSA:3.40.190.10 | - | 279 | 428 | 5.0E-37 | - |
| PRINTS | PR00909 | Bacterial periplasmic spermidine/putrescine-binding protein signature | 317 | 336 | 1.9E-13 | IPR001188 |
| PRINTS | PR00909 | Bacterial periplasmic spermidine/putrescine-binding protein signature | 403 | 422 | 1.9E-13 | IPR001188 |
| PRINTS | PR00909 | Bacterial periplasmic spermidine/putrescine-binding protein signature | 299 | 313 | 1.9E-13 | IPR001188 |
| PRINTS | PR00909 | Bacterial periplasmic spermidine/putrescine-binding protein signature | 270 | 286 | 1.9E-13 | IPR001188 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31410.1 | putrescine-binding periplasmic protein-related. | 0 |
| RefSeq | XP_017223137.1 | PREDICTED: uncharacterized protein LOC108199705 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A6L5BCC5 | Spermidine/putrescine ABC transporter substrate-binding protein OS=Apium graveolens OX=4045 GN=AG4045_002087 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 3.471832 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.220087 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.6926 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.791467 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.951482 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.576693 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.813792 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.543434 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 11.715224 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 12.322488 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 13.514533 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 9.503084 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 12.302598 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 8.695058 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.935921 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.362677 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.380656 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.967224 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 8.708821 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 2.564619 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 5.709422 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 4.105866 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 4.768476 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.293136 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.727041 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 7.079426 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 2.498482 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 8.363129 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 5.104286 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.544936 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.719637 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.265705 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.614365 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.796994 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.596014 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.717149 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.655695 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.361562 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 9.954518 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 9.868532 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 13.889939 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.778416 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.980905 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 5.043438 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 5.921105 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.747129 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 4.069831 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 7.763752 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 7.870754 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 7.627068 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4645 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_14672, gene_14673, gene_14677 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004692 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g108350 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24315, Sbi_jg8147 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg11876, Seu_jg22277 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010862 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004336, gene:ENSEOMG00000020398 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0000850, CQ.Regalona.r1.5BG0001020 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30020980 |
| Apiaceae | Apium graveolens | 2 | Ag3G01323, AgUnG00511 |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G009680 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716646 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1062.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G13161 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G31410.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007328m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g27210.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g034920.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0859 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0985 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno18g03190 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0461s00014.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g04170 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.431 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003703 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G12031, Lb7G35212 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2197, BH09.2367, CH09.2512 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0305010, gene-QOZ80_4BG0335960 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0193220.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_046136 |
| Poaceae | Oryza coarctata | 2 | Oco07G015060, Oco08G014560 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g51310.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G217000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0301416, Pt_Chr0301429 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G003600, Chr26G014820 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G740600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG062680, gene_TRIDC2BG066740 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G435900.1, TraesCS2B02G457300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb071790_P001, Zm00001eb430350_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-22767 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20381 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.549, evm.TU.LG17.560 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc07g06100, gene.Posoc10g02670 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_16_RagTag.666, evm.TU.Scaffold_16_RagTag.667 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24823 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19072 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.173 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016192 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-182 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10437 |
| Salicaceae | Populus euphratica | 2 | populus_peu34162, populus_peu34163 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609595 |
| Solanaceae | Solanum chilense | 1 | SOLCI005776000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026732 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15480 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0555 |
| Zosteraceae | Zostera marina | 1 | Zosma02g06060.v3.1 |