halophFGD

Basic Information

Locus ID: Ag3G01242

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: BRI1

Description: Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	65434583	65437256	-	Ag3G01242

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.88	92,297.92 Da	31.76	103.04	0.03

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13516	Leucine Rich repeat	264	280	0.77	IPR001611
Pfam	PF00560	Leucine Rich Repeat	437	459	0.17	IPR001611
Pfam	PF13516	Leucine Rich repeat	168	182	0.44	IPR001611
Pfam	PF08263	Leucine rich repeat N-terminal domain	24	62	1.7E-6	IPR013210
Pfam	PF13855	Leucine rich repeat	509	568	7.0E-7	IPR001611
Pfam	PF13855	Leucine rich repeat	289	349	1.4E-6	IPR001611
SUPERFAMILY	SSF52058	L domain-like	286	753	4.08E-59	-
SUPERFAMILY	SSF52047	RNI-like	70	407	2.28E-44	-
Gene3D	G3DSA:3.30.1490.310	-	586	646	2.5E-300	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	31	764	2.5E-300	IPR032675

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K13415 (protein brassinosteroid insensitive 1 [EC:2.7.10.1 2.7.11.1])

Pathway:

ko04075 (Plant hormone signal transduction) map04075 (Plant hormone signal transduction)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G39400.1	Leucine-rich receptor-like protein kinase family protein. Encodes a plasma membrane localized leucine-rich repeat receptor kinase involved in brassinosteroid signal transduction. BRI1 ligand is brassinolide which binds at the extracellular domain. Binding results in phosphorylation of the kinase domain which activates the BRI1 protein leading to BR responses. Residue T-1049 and either S-1044 or T-1045 were essential for kinase function in vitro and normal BRI1 signaling in planta. Although BAK1 and BRI1 alone localize in the plasma membrane, when BAK1 and BRI1 are coexpressed, the heterodimer BAK1/BRI1 they form is localized in the endosome. BRI1 appears to be involved in the autonomous pathway that regulates the transition to flowering, primarily through its effects on FLC expression levels, as uncovered by double mutant analyses. This most likely occurs as a result of BRI1-dependent effects on histone acetylation, but not histone triMeH3K4 methylation, at the FLC locus.
RefSeq	XP_017228526.1	PREDICTED: systemin receptor SR160 [Daucus carota subsp. sativus]
Swiss-Prot	Q8L899	Systemin receptor SR160 OS=Solanum peruvianum OX=4082 PE=1 SV=1
TrEMBL	A0A166GA49	non-specific serine/threonine protein kinase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001384 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.009932	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	2.250757	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	2.681658	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	2.337188	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	2.307084	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.597098	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.800079	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.083579	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	25.517166	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	22.906713	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	26.608074	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	18.88447	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	14.236808	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	8.61975	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	2.845575	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	9.274679	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	12.708336	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	31.141167	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	23.950951	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	40.862041	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	30.974558	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	205.410065	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	253.340302	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	186.637924	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	156.885803	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	62.131172	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	67.135612	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	38.093983	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	69.10321	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	3.981572		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	3.625041		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	6.100032		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	1.71612		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	2.655054		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	1.02377		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	1.484151		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	2.211304		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.639997		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	7.100651	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	10.175327	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	2.116558	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.326677	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.814249	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	7.043999	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	15.59807	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.185782	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	36.578976	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	11.953932	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	4.60005	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	10.570418	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg16969, jg20134, jg20597, jg39452, jg5096
Aizoaceae	Mesembryanthemum crystallinum	2	gene_13304, gene_17787
Amaranthaceae	Atriplex hortensis	3	Ah026997, Ah027172, Ah035268
Amaranthaceae	Beta vulgaris	2	BVRB_2g024180, BVRB_6g131900
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg13558, Sbi_jg21385, Sbi_jg22467, Sbi_jg30918 ... Sbi_jg52335, Sbi_jg58360
Amaranthaceae	Salicornia europaea	3	Seu_jg16345, Seu_jg25960, Seu_jg9522
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00016421, GOSA_00017518, GOSA_00023162
Amaranthaceae	Suaeda glauca	6	Sgl33353, Sgl33704, Sgl38707, Sgl39015, Sgl62901, Sgl67514
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000000128, gene:ENSEOMG00000001631 ... gene:ENSEOMG00000003080, gene:ENSEOMG00000003519, gene:ENSEOMG00000020379, gene:ENSEOMG00000025380, gene:ENSEOMG00000028073, gene:ENSEOMG00000049354
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.1BG0019470, CQ.Regalona.r1.2AG0021170 ... CQ.Regalona.r1.6AG0021280, CQ.Regalona.r1.6AG0022780, CQ.Regalona.r1.6BG0022460, CQ.Regalona.r1.6BG0024100
Anacardiaceae	Pistacia vera	3	pistato.v30043920, pistato.v30150980, pistato.v30219230
Apiaceae	Apium graveolens	5	Ag3G01242, Ag3G02408, Ag4G02200, Ag7G02272, Ag8G01911
Arecaceae	Cocos nucifera	6	COCNU_01G006760, COCNU_02G000700, COCNU_05G009110 ... COCNU_06G001450, COCNU_11G010960, COCNU_14G000730
Arecaceae	Phoenix dactylifera	6	gene-LOC103696970, gene-LOC103702338, gene-LOC103704826 ... gene-LOC103710640, gene-LOC103713759, gene-LOC103720660
Asparagaceae	Asparagus officinalis	4	AsparagusV1_01.2219.V1.1, AsparagusV1_03.1255.V1.1 ... AsparagusV1_05.1187.V1.1, AsparagusV1_08.577.V1.1
Asteraceae	Flaveria trinervia	4	Ftri12G24194, Ftri12G31250, Ftri15G22334, Ftri17G02835
Brassicaceae	Arabidopsis thaliana	4	AT1G55610.1, AT2G01950.1, AT3G13380.1, AT4G39400.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10003548m.g.v1.0, Thhalv10011192m.g.v1.0 ... Thhalv10019932m.g.v1.0, Thhalv10024249m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g41230.v2.2, Sp2g13390.v2.2, Sp3g11570.v2.2 ... Sp7g36460.v2.2
Brassicaceae	Brassica nigra	5	BniB01g051820.2N, BniB02g065260.2N, BniB03g015200.2N ... BniB05g000520.2N, BniB07g000790.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq01G1580, Ceq06G1844
Casuarinaceae	Casuarina glauca	3	Cgl01G1743, Cgl06G1908, Cgl09G0901
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno06g09320, gene.Cymno12g00570, gene.Cymno16g00720
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate03g19520, gene.Thate05g25160, gene.Thate09g18080
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-7279
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG02.779, evm.TU.LG03.1129, evm.TU.LG05.2132
Plantaginaceae	Plantago ovata	3	Pov_00004331, Pov_00020870, Pov_00025891
Plumbaginaceae	Limonium bicolor	2	Lb1G06042, Lb4G25660
Poaceae	Echinochloa crus-galli	1	CH08.1273
Poaceae	Eleusine coracana subsp. coracana	9	gene-QOZ80_1AG0031240, gene-QOZ80_1BG0081200 ... gene-QOZ80_2AG0119340, gene-QOZ80_2BG0174110, gene-QOZ80_6AG0520910, gene-QOZ80_6BG0473390, gene-QOZ80_8AG0627020, gene-QOZ80_8AG0627030, gene-QOZ80_8BG0655710
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.3HG0235070.1.CDS1 ... HORVU.MOREX.r3.3HG0285210.1.CDS1, HORVU.MOREX.r3.5HG0471560.1.CDS1
Poaceae	Lolium multiflorum	2	gene-QYE76_004382, gene-QYE76_054950
Poaceae	Oryza coarctata	6	Oco01G020520, Oco02G019250, Oco16G006440, Oco17G001930 ... Oco18G001830, Oco19G000240
Poaceae	Oryza sativa	4	LOC_Os01g52050.1, LOC_Os08g25380.1, LOC_Os09g12240.1 ... LOC_Os10g02500.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G267200, gene-BS78_02G140500 ... gene-BS78_03G257300, gene-BS78_09G256400
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0500404, Pt_Chr0602728, Pt_Chr0602860, Pt_Chr0702726
Poaceae	Sporobolus alterniflorus	11	Chr02G011190, Chr02G012090, Chr03G015010, Chr05G022490 ... Chr06G021770, Chr08G015100, Chr0G030680, Chr11G015700, Chr15G017360, Chr21G006730, Chr29G007540
Poaceae	Thinopyrum elongatum	3	Tel3E01G173400, Tel3E01G416500, Tel5E01G300700
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG012010, gene_TRIDC3AG036670 ... gene_TRIDC3BG016160, gene_TRIDC3BG041310, gene_TRIDC5AG028880, gene_TRIDC5BG030350
Poaceae	Triticum aestivum	9	TraesCS3A02G099400.1.cds1, TraesCS3A02G245000.1.cds1 ... TraesCS3B02G115800.1.cds1, TraesCS3B02G275000.1.cds1, TraesCS3D02G099700.1.cds1, TraesCS3D02G246500.1.cds1, TraesCS5A02G177300.1.cds1, TraesCS5B02G174400.1.cds1, TraesCS5D02G181500.1.cds1
Poaceae	Zea mays	5	Zm00001eb026010_P001, Zm00001eb154730_P001 ... Zm00001eb177520_P001, Zm00001eb309030_P001, Zm00001eb361520_P001
Poaceae	Zoysia japonica	5	nbis-gene-12750, nbis-gene-26311, nbis-gene-28793 ... nbis-gene-43830, nbis-gene-53180
Poaceae	Zoysia macrostachya	5	Zma_g11019, Zma_g15818, Zma_g29683, Zma_g31885, Zma_g8534
Portulacaceae	Portulaca oleracea	4	evm.TU.LG03.2364, evm.TU.LG07.323, evm.TU.LG15.634 ... evm.TU.LG17.1410
Posidoniaceae	Posidonia oceanica	4	gene.Posoc02g22660, gene.Posoc03g09820, gene.Posoc07g05710 ... gene.Posoc09g11180
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_17_RagTag.717, evm.TU.Scaffold_3_RagTag.1028 ... evm.TU.Scaffold_6_RagTag.1611, evm.TU.Scaffold_7_RagTag.3
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-17573, nbisL1-mrna-19750, nbisL1-mrna-23409
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-10201, nbisL1-mrna-12590, nbisL1-mrna-17770 ... nbisL1-mrna-19847
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-12169, nbisL1-mrna-20030, nbisL1-mrna-22391 ... nbisL1-mrna-2296
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000011l.382, add.evm.TU.utg000013l.133 ... add.evm.TU.utg000019l.277, add.evm.TU.utg000028l.1
Rhizophoraceae	Kandelia obovata	2	Maker00004508, Maker00007000
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-19939, nbisL1-mrna-21027, nbisL1-mrna-22836 ... nbisL1-mrna-22860
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-14331, nbisL1-mrna-1719, nbisL1-mrna-22537 ... nbisL1-mrna-4469
Salicaceae	Populus euphratica	6	populus_peu00004, populus_peu07264, populus_peu13880 ... populus_peu17081, populus_peu21261, populus_peu23048
Solanaceae	Lycium barbarum	3	gene-LOC132614975, gene-LOC132615004, gene-LOC132616627
Solanaceae	Solanum chilense	4	SOLCI002088200, SOLCI002216100, SOLCI002599500 ... SOLCI004292600
Solanaceae	Solanum pennellii	4	gene-LOC107015854, gene-LOC107017735, gene-LOC107024267 ... gene-LOC107027997
Tamaricaceae	Reaumuria soongarica	3	STRG.19650_chr07_-, STRG.5156_chr03_-, gene_2243
Tamaricaceae	Tamarix chinensis	3	TC03G0328, TC04G0446, TC11G0356
Zosteraceae	Zostera marina	5	Zosma01g05850.v3.1, Zosma03g14440.v3.1, Zosma03g14450.v3.1 ... Zosma05g14380.v3.1, Zosma05g25890.v3.1