Basic Information
Locus ID:
Ag3G01235
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 64545176 | 64553442 | + | Ag3G01235 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 71,123.37 Da | 53.62 | 89.21 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 79 | 624 | 1.3E-41 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 77 | 626 | 9.39E-70 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 74 | 632 | 3.4E-69 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 78 | 627 | 37.828709 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 555 | 572 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 79 | 94 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G39370.1 | ubiquitin-specific protease 27. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_017242588.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q9FPS0 | Ubiquitin carboxyl-terminal hydrolase 27 OS=Arabidopsis thaliana OX=3702 GN=UBP27 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166BPK3 | USP domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011465 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.432842 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.705846 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.982747 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.618299 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.225824 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.980422 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.849169 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.14954 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 8.811922 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 8.738585 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 12.793847 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 8.694556 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 8.967063 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 5.917873 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.124082 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.583616 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.6456 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 3.423965 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.70447 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.23156 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.984421 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 6.975992 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.652219 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 6.658399 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 6.589725 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 4.465433 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.323734 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.022301 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 4.209723 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.65762 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.762474 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.756321 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.335406 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.442583 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.63368 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.394969 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.719074 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.829721 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.163415 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.50439 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.124426 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.46596 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 2.643988 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 4.158706 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 4.052926 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 3.23992 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 4.489971 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 9.356162 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 7.345262 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 8.782709 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg16964 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13300 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027166 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g133440 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg58902, Sbi_jg63707 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23185 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010466 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33709, Sgl39020 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000663, gene:ENSEOMG00000000793 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0022710, CQ.Regalona.r1.6BG0024010 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30044010 |
| Apiaceae | Apium graveolens | 1 | Ag3G01235 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G001940 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701244 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.744.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G03258 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G39370.3 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025021m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g36490.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g015230.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1852 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1918 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g00470 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0514s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g11560 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.786 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014405 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06102 |
| Poaceae | Echinochloa crus-galli | 2 | AH09.1002, BH09.1076 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0317650, gene-QOZ80_4BG0349050 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0168270.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_044022 |
| Poaceae | Oryza coarctata | 1 | Oco07G005840 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g34984.3 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G094700 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G013070, Chr24G010710, Chr25G011350 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G533400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG043850, gene_TRIDC2BG046510 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G302200.2, TraesCS2B02G318000.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb082910_P001, Zm00001eb159190_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21279 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.328, evm.TU.LG15.629 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g01460 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1073 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19430 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2294 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.627 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15012 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1715 |
| Salicaceae | Populus euphratica | 2 | populus_peu23055, populus_peu23066 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613766 |
| Solanaceae | Solanum chilense | 1 | SOLCI002675200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016139 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5822 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2874 |
| Zosteraceae | Zostera marina | 1 | Zosma01g42210.v3.1 |