halophFGD

Basic Information

Locus ID: Ag3G01174

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Mitogen-activated protein kinase kinase kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	60027724	60033247	-	Ag3G01174

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.61	69,152.20 Da	58.24	66.91	-0.62

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd06632	STKc_MEKK1_plant	224	481	9.45054E-179	-
Pfam	PF00069	Protein kinase domain	226	481	1.8E-71	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	222	539	5.4E-89	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	222	519	1.9E-86	-
SMART	SM00220	serkin_6	225	481	9.1E-95	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	225	481	50.039318	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	231	254	-	IPR017441
MobiDBLite	mobidb-lite	consensus disorder prediction	154	172	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	177	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	138	152	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	98	119	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	55	71	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	10	44	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04420 (mitogen-activated protein kinase kinase kinase 2 [EC:2.7.11.25])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G53570.4	mitogen-activated protein kinase kinase kinase 3. MEK kinase (MAP3Ka)
RefSeq	XP_017228872.1	PREDICTED: mitogen-activated protein kinase kinase kinase YODA isoform X3 [Daucus carota subsp. sativus]
Swiss-Prot	F4HRJ4	Mitogen-activated protein kinase kinase kinase 3 OS=Arabidopsis thaliana OX=3702 GN=MAPKKK3 PE=1 SV=1
TrEMBL	A0A162B153	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001213 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	31.664175	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	26.066547	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	27.303902	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	26.772327	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	28.048391	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	28.04796	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	29.365658	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	34.412315	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	36.485119	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	41.080502	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	41.651379	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	35.099113	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	31.281012	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	24.948191	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	39.611088	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	30.46734	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	27.955353	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	24.079187	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	34.164703	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	29.453951	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	26.730165	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	26.809956	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	27.308758	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	27.357153	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	25.168863	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	21.818085	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	23.748213	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	24.368393	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	21.236078	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	14.05689		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	10.775846		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	9.181283		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	37.430042		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	25.931454		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	49.496418		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	35.315422		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	14.361621		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	22.14031		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	15.423674	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	17.755726	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	15.510523	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	36.740757	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	47.234581	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	47.288868	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	46.526283	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	33.593792	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	46.293404	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	35.798126	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	33.762135	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	35.38641	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg17136, jg39666
Aizoaceae	Mesembryanthemum crystallinum	1	gene_17938
Amaranthaceae	Atriplex hortensis	1	Ah027077
Amaranthaceae	Beta vulgaris	1	BVRB_6g132530
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg13463, Sbi_jg52406
Amaranthaceae	Salicornia europaea	1	Seu_jg9443
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00023143
Amaranthaceae	Suaeda glauca	2	Sgl33778, Sgl39092
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000000656, gene:ENSEOMG00000001278 ... gene:ENSEOMG00000025179, gene:ENSEOMG00000028261
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.6AG0021960, CQ.Regalona.r1.6BG0023150
Anacardiaceae	Pistacia vera	1	pistato.v30110990
Apiaceae	Apium graveolens	2	Ag3G01174, Ag7G02200
Arecaceae	Cocos nucifera	3	COCNU_02G011720, COCNU_15G003370, contig69639897G000010
Arecaceae	Phoenix dactylifera	2	gene-LOC103711039, gene-LOC103720517
Asparagaceae	Asparagus officinalis	1	AsparagusV1_02.633.V1.1
Asteraceae	Flaveria trinervia	2	Ftri17G22230, Ftri6G17484
Brassicaceae	Arabidopsis thaliana	1	AT1G53570.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10022608m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp3g27060.v2.2
Brassicaceae	Brassica nigra	2	BniB02g011410.2N, BniB07g012080.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq06G1729
Casuarinaceae	Casuarina glauca	1	Cgl06G1789
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno07g02540, gene.Cymno08g06960
Dunaliellaceae	Dunaliella salina	1	Dusal.0059s00019.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g12760
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-10206, nbisL1-mrna-10694, nbisL1-mrna-5271
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG02.870
Plantaginaceae	Plantago ovata	2	Pov_00014231, Pov_00020450
Plumbaginaceae	Limonium bicolor	3	Lb1G06374, Lb1G06387, Lb5G27777
Poaceae	Echinochloa crus-galli	9	AH07.2197, AH09.1051, BH04.979, BH07.2181, BH09.1130 ... CH04.1130, CH07.2072, CH09.1269, Contig398.18
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_2AG0133980, gene-QOZ80_2BG0189490 ... gene-QOZ80_2BG0189500, gene-QOZ80_4AG0316930, gene-QOZ80_4BG0348180, gene-QOZ80_9AG0677930, gene-QOZ80_9BG0701640
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0169650.1, HORVU.MOREX.r3.4HG0346120.2
Poaceae	Lolium multiflorum	2	gene-QYE76_008382, gene-QYE76_044105
Poaceae	Oryza coarctata	6	Oco03G012510, Oco04G013820, Oco07G006360, Oco08G006320 ... Oco21G002980, Oco22G003790
Poaceae	Oryza sativa	3	LOC_Os02g35010.1, LOC_Os04g35700.1, LOC_Os11g10100.1
Poaceae	Paspalum vaginatum	4	gene-BS78_04G161600, gene-BS78_05G145500, gene-BS78_K191800 ... gene-BS78_06G102200
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0103952, Pt_Chr0302613, Pt_Chr0302649
Poaceae	Sporobolus alterniflorus	7	Chr07G018490, Chr15G011360, Chr16G011540, Chr17G010790 ... Chr23G012650, Chr26G006870, Chr31G003670
Poaceae	Thinopyrum elongatum	2	Tel2E01G540300, Tel4E01G166400
Poaceae	Triticum dicoccoides	4	gene_TRIDC2AG044550, gene_TRIDC2BG047240 ... gene_TRIDC4AG033650, gene_TRIDC4BG016170
Poaceae	Triticum aestivum	6	TraesCS2A02G307100.1, TraesCS2B02G323700.2 ... TraesCS2D02G305500.1, TraesCS4A02G211600.1, TraesCS4B02G104900.1, TraesCS4D02G101800.3
Poaceae	Zea mays	4	Zm00001eb071350_P002, Zm00001eb168730_P005 ... Zm00001eb243650_P002, Zm00001eb422820_P001
Poaceae	Zoysia japonica	4	nbis-gene-20739, nbis-gene-23341, nbis-gene-23347 ... nbis-gene-53781
Poaceae	Zoysia macrostachya	4	Zma_g17792, Zma_g17793, Zma_g18671, Zma_g21311
Portulacaceae	Portulaca oleracea	2	evm.TU.LG03.2414, evm.TU.LG17.1459
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g11800, gene.Posoc05g18320
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_3_RagTag.900, evm.TU.Scaffold_6_RagTag.1510
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-1109
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-11150, nbisL1-mrna-9269
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-22540, nbisL1-mrna-6562
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000011l.920, evm.TU.utg000019l.658
Rhizophoraceae	Kandelia obovata	2	Maker00007259, Maker00012847
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-15774, nbisL1-mrna-5122
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-19719, nbisL1-mrna-23687
Salicaceae	Populus euphratica	2	populus_peu13646, populus_peu22808
Solanaceae	Lycium barbarum	2	gene-LOC132614984, gene-LOC132627225
Solanaceae	Solanum chilense	2	SOLCI001442400, SOLCI004101600
Solanaceae	Solanum pennellii	2	gene-LOC107004855, gene-LOC107018254
Tamaricaceae	Reaumuria soongarica	2	STRG.19610_chr07_+, gene_3399
Tamaricaceae	Tamarix chinensis	2	TC04G0357, TC11G0297
Zosteraceae	Zostera marina	2	Zosma04g14690.v3.1, Zosma05g10810.v3.1