Basic Information
Locus ID:
Ag3G01154
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 58120368 | 58121907 | + | Ag3G01154 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.04 | 41,020.99 Da | 34.20 | 84.67 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 80 | 360 | 1.0E-46 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 51 | 360 | 2.83E-75 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 41 | 153 | 5.0E-29 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 154 | 363 | 1.1E-56 | - |
| SMART | SM00220 | serkin_6 | 78 | 364 | 1.1E-33 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 78 | 364 | 38.505974 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 84 | 106 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 207 | 219 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42440.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017218260.1 | PREDICTED: leucine-rich repeat receptor protein kinase EMS1 [Daucus carota subsp. sativus] | 0 |
| Q9LYN8 | Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana OX=3702 GN=EMS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161ZLP3 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_024174 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.002042 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.986336 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.432832 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.062206 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.729771 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.644665 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.111637 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.327738 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 32.682663 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 29.115019 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 32.0355 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 16.686533 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 20.711946 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 17.061802 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 18.818438 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 21.602667 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 13.631499 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 35.711643 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 22.613894 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 42.867279 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 42.381142 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 16.537563 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 13.121187 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 11.442888 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 20.715975 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 11.8418 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 12.418975 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.824255 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 11.367241 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 5.180331 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.657624 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.684145 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 38.948025 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 21.92956 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 36.222782 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 34.005241 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 13.841791 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 23.397779 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.647839 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 17.533524 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.972765 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 65.378479 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 58.886566 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 40.849781 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 35.495117 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 58.631618 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 39.427135 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 12.640407 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 10.711008 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 9.142426 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg11645, jg23054 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_942 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022618 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl14947, Sgl20063 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000035016, gene:ENSEOMG00000047392 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0010930 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30283010 |
| Apiaceae | Apium graveolens | 1 | Ag3G01154 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G010620, COCNU_06G011290, COCNU_15G001950 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103701245, gene-LOC103703254 |
| Asteraceae | Flaveria trinervia | 3 | Ftri16G06221, Ftri16G12194, Ftri2G00970 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G42440.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016827m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g23230.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g004490.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1470 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g07880 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g14010 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1656 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00036930 |
| Poaceae | Echinochloa crus-galli | 4 | AH04.390, BH04.398, CH02.163, CH04.415 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0671620, gene-QOZ80_9BG0695110 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0349400.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_064673, gene-QYE76_064805 |
| Poaceae | Oryza coarctata | 1 | Oco22G002870 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g06780.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G067300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0104230, Pt_Chr0104254 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G010060, Chr17G009100 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G177900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG033070, gene_TRIDC4BG017270 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G207800.1, TraesCS4B02G111300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb202020_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-56614 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17618 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1082, evm.TU.LG17.1204 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g20430 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1250 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18569 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17026 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13224 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000002l.133 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011720 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20311 |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-18456, nbisL1-mrna-18460, nbisL1-mrna-18465 ... |
| Salicaceae | Populus euphratica | 2 | populus_peu14909, populus_peu32586 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627359 |
| Solanaceae | Solanum chilense | 1 | SOLCI002242300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015891 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14185 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G2027 |
| Zosteraceae | Zostera marina | 1 | Zosma05g11800.v3.1 |