Basic Information
Locus ID:
Ag3G01125
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Tyrosine kinase, catalytic domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 54500288 | 54516034 | + | Ag3G01125 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 62,174.25 Da | 44.27 | 83.06 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 296 | 538 | 8.08025E-133 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 290 | 538 | 2.9E-73 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 281 | 544 | 1.73E-83 | IPR011009 |
| SUPERFAMILY | SSF55021 | ACT-like | 185 | 251 | 1.62E-8 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 369 | 555 | 5.1E-61 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 279 | 368 | 4.7E-27 | - |
| SMART | SM00220 | serkin_6 | 290 | 542 | 2.2E-66 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 290 | 542 | 44.074772 | IPR000719 |
| ProSiteProfiles | PS51671 | ACT domain profile. | 186 | 264 | 12.780483 | IPR002912 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 407 | 419 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 447 | 457 | 7.4E-18 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 364 | 377 | 7.4E-18 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 509 | 531 | 7.4E-18 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 466 | 488 | 7.4E-18 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 401 | 419 | 7.4E-18 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 272 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38470.2 | - | 0 |
| RefSeq | XP_017229274.1 | PREDICTED: serine/threonine-protein kinase STY46-like isoform X3 [Daucus carota subsp. sativus] | 0 |
| F4JTP5 | Serine/threonine-protein kinase STY46 OS=Arabidopsis thaliana OX=3702 GN=STY46 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166G6K4 | Serine/threonine-protein kinase STY8-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001129 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.47344 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.878064 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.585639 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.900696 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.43538 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 8.701541 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 6.005301 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.577789 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 21.692921 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 24.462095 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 27.170622 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 24.380209 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 20.295471 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 19.406313 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 15.564007 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 15.103996 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 16.183083 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 22.614374 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 16.156315 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 17.077679 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 18.242723 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 22.402378 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 20.051664 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 16.437449 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 19.814129 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 21.139874 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 20.168003 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 17.484827 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 22.046778 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 11.47204 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 11.930547 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 9.756327 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 15.549726 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 14.270429 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 17.158766 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 8.501155 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 7.076501 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 7.140512 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 22.056025 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 11.425386 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 8.858415 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 22.996231 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 10.089835 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 18.033392 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 15.378187 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 23.501205 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 21.175018 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 16.554041 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 17.966454 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 20.229639 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg23072 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22877 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah024374 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g011310 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg38909, Sbi_jg54217 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg10793 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023740 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl10161, Sgl15313, Sgl15363 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013155, gene:ENSEOMG00000035227 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0014280, CQ.Regalona.r1.1BG0011760 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30038040 |
| Apiaceae | Apium graveolens | 2 | Ag3G01125, AgUnG00309 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G001460 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103701194, gene-LOC103704336 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_09.146.V1.1, AsparagusV1_10.1676.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G28737 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1959 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2106 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g08170 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g28500, gene.Thate09g01810 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-12253 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.724 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023006 |
| Poaceae | Echinochloa crus-galli | 10 | AH04.310, AH05.269, AH08.25, BH01.1418, BH04.361, BH05.313 ... |
| Poaceae | Eleusine coracana subsp. coracana | 8 | gene-QOZ80_4AG0298610, gene-QOZ80_4BG0329310 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0214820.1, HORVU.MOREX.r3.5HG0458010.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_002961, gene-QYE76_011103, gene-QYE76_033664 ... |
| Poaceae | Oryza coarctata | 5 | Oco07G019840, Oco21G001770, Oco22G002620, Oco23G002350 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os04g59000.1, LOC_Os08g01270.1, LOC_Os12g06670.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_05G061300, gene-BS78_06G292200 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0402733, Pt_Chr0703280 |
| Poaceae | Sporobolus alterniflorus | 10 | Chr04G022680, Chr06G024460, Chr16G009920, Chr17G008950 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G996100, Tel5E01G227700, Tel7E01G560200 |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC2AG080090, gene_TRIDC2AG080130 ... |
| Poaceae | Triticum aestivum | 12 | TraesCS2A02G577000.1, TraesCS2A02G577200.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb139460_P002, Zm00001eb198810_P002 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-25577, nbis-gene-41377, nbis-gene-46322 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g22278, Zma_g23478, Zma_g24779, Zma_g25522 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1378, evm.TU.LG05.1902 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g01280, gene.Posoc05g21050 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1215 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18618 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1086 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13191 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.368 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011605 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8934 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18419 |
| Salicaceae | Populus euphratica | 2 | populus_peu14863, populus_peu32538 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627294 |
| Solanaceae | Solanum chilense | 1 | SOLCI003896200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018048 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2855 |
| Zosteraceae | Zostera marina | 2 | Zosma02g01600.v3.1, Zosma04g23940.v3.1 |