halophFGD

Basic Information

Locus ID: Ag3G01124

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Protein kinase APK1B, chloroplastic-like

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	54437085	54440433	-	Ag3G01124

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.75	35,376.46 Da	39.40	95.64	-0.31

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00069	Protein kinase domain	47	298	2.4E-19	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	15	303	1.57E-39	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	3	107	2.8E-15	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	111	307	5.1E-26	-
ProSiteProfiles	PS50011	Protein kinase domain profile.	24	307	21.898525	IPR000719

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G35580.1	Protein kinase superfamily protein.
RefSeq	XP_017238574.1	PREDICTED: serine/threonine-protein kinase BIK1-like [Daucus carota subsp. sativus]
Swiss-Prot	F4JZW1	Serine/threonine-protein kinase PBL13 OS=Arabidopsis thaliana OX=3702 GN=PBL13 PE=1 SV=1
TrEMBL	A0A166AMC6	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_010241 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	11.908431	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	27.178921	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	27.98703	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	27.866991	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	30.603607	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	43.929337	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	27.870758	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	23.264833	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	32.192604	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	33.549995	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	39.165749	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	42.312706	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	40.738552	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	30.284882	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	13.965764	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	12.546193	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	16.804089	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	11.663502	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	15.704329	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	12.298125	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	12.364132	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	16.676849	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	18.737347	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	11.665417	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	22.004074	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	12.266727	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	16.758892	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	8.486716	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	18.670702	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	4.386854		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	4.728601		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	4.74622		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	7.827219		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	7.102707		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	8.196846		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	5.678987		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	13.85536		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	11.542667		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	4.628394	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	3.892027	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	4.546964	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	15.238876	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	12.997562	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	12.9391	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	11.386536	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	18.996801	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	14.69719	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	12.222988	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	13.76908	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	10.114618	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	5	gene_18400, gene_18664, gene_24620, gene_3959, gene_683
Apiaceae	Apium graveolens	1	Ag3G01124
Arecaceae	Cocos nucifera	7	COCNU_01G004170, COCNU_01G004180, COCNU_01G004190 ... COCNU_01G004200, COCNU_01G004620, COCNU_01G004630, COCNU_07G010410
Plantaginaceae	Plantago ovata	2	Pov_00013102, Pov_00020524
Portulacaceae	Portulaca oleracea	1	evm.TU.LG05.1782
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.44822.1, evm.TU.45225.1
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-12784, nbisL1-mrna-12785
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-16414, nbisL1-mrna-16417
Solanaceae	Solanum chilense	1	SOLCI001117600
Solanaceae	Solanum pennellii	2	gene-LOC107008469, gene-LOC107014036
Tamaricaceae	Reaumuria soongarica	2	STRG.22124_chr09_-, STRG.740_chr01_-