Basic Information
Locus ID:
Ag3G01105
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Inactive leucine-rich repeat receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 52077507 | 52079207 | + | Ag3G01105 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.52 | 19,495.43 Da | 22.74 | 111.56 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 46 | 166 | 2.3E-13 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 21 | 167 | 1.97E-25 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 18 | 171 | 1.9E-23 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 173 | 16.584143 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63410.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_017257942.1 | PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Daucus carota subsp. sativus] | 0 |
| Q8LFN2 | Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 OS=Arabidopsis thaliana OX=3702 GN=At3g03770 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161XDT3 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021769 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.331211 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.786149 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg13365, jg17704, jg25627, jg40454 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14019 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001919 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31699, Sbi_jg57608 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25297 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00025080 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54216, Sgl59553 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007890, gene:ENSEOMG00000022294 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0016530, CQ.Regalona.r1.5BG0017790 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30024360, pistato.v30028210 |
| Apiaceae | Apium graveolens | 4 | Ag3G01105, Ag4G00710, Ag5G00745, Ag9G00409 |
| Arecaceae | Cocos nucifera | 1 | scaffold003417G000060 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702931 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.3013.V1.1, AsparagusV1_06.288.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri17G30445, Ftri18G28122, Ftri1G15365, Ftri1G32425 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G14210.1, AT5G63410.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10003757m.g.v1.0, Thhalv10012902m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g26500.v2.2, Sp6g29820.v2.2, SpUn0049_0010.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g048450.2N, BniB07g042210.2N, BniB08g006820.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G1686, Ceq08G0188 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G1868, Cgl08G0129 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g04890 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0136s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g15330, gene.Thate06g10660 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6878, nbisL1-mrna-6879 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.165 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027785 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G07791, Lb1G07801, Lb2G15063, Lb8G36639 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.1134, BH04.1108, CH04.1286 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0679110, gene-QOZ80_9BG0702900 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0341900.1 |
| Poaceae | Oryza coarctata | 2 | Oco21G004520, Oco22G005650 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g20360.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G127900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0104320 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G018100, Chr31G004210 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G121400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG037860, gene_TRIDC4BG011680 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G239600.1, TraesCS4B02G075400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb167780_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-35941 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17848 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG01.2813 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g15060 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_3_RagTag.2006, evm.TU.Scaffold_4_RagTag.373 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14844, nbisL1-mrna-28997 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-11610, nbisL1-mrna-6811, nbisL1-mrna-7971 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-1938, nbisL1-mrna-3153, nbisL1-mrna-43 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000008l.240, evm.TU.utg000011l.30 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00000612, Maker00001668, Maker00007509 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11946, nbisL1-mrna-14671 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1372, nbisL1-mrna-17547 |
| Salicaceae | Populus euphratica | 3 | populus_peu01211, populus_peu28825, populus_peu30236 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132622690, gene-LOC132623272 |
| Solanaceae | Solanum chilense | 2 | SOLCI000006900, SOLCI006867800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107011604, gene-LOC107011721 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.22457_chr10_-, gene_11156 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G0504, TC08G2612 |
| Zosteraceae | Zostera marina | 1 | Zosma02g00970.v3.1 |