Basic Information
Locus ID:
Ag3G01101
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 51903388 | 51907306 | - | Ag3G01101 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 119,003.29 Da | 34.00 | 107.03 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 765 | 1033 | 4.8E-41 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 479 | 538 | 8.7E-9 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 407 | 429 | 0.38 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 25 | 66 | 8.0E-6 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 597 | 621 | 0.5 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 95 | 152 | 1.3E-7 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 350 | 671 | 7.22E-59 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 758 | 1045 | 1.78E-69 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 47 | 395 | 4.08E-59 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 841 | 1064 | 8.4E-58 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 186 | 2.1E-41 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 600 | 670 | 2.9E-14 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 729 | 840 | 6.9E-19 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 201 | 360 | 3.4E-44 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 361 | 599 | 9.4E-77 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 549 | 572 | 60.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 357 | 381 | 32.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 622 | 647 | 28.0 | - |
| SMART | SM00369 | LRR_typ_2 | 140 | 164 | 52.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 261 | 282 | 460.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 333 | 359 | 550.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 405 | 431 | 250.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 525 | 548 | 170.0 | - |
| SMART | SM00369 | LRR_typ_2 | 622 | 645 | 270.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 116 | 142 | 300.0 | - |
| SMART | SM00369 | LRR_typ_2 | 116 | 139 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 477 | 501 | 34.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 285 | 309 | 190.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 762 | 1037 | 3.3E-21 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 429 | 453 | 94.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 525 | 548 | 54.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 333 | 356 | 400.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 624 | 646 | 7.034293 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 762 | 1040 | 35.339958 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 407 | 429 | 7.157505 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 884 | 896 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 768 | 790 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 408 | 421 | 3.5E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 525 | 538 | 3.5E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1049 | 1083 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1045 | 1083 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24240.1 | Leucine-rich repeat receptor-like protein kinase family protein. | 0 |
| RefSeq | XP_017237875.1 | PREDICTED: LRR receptor-like serine/threonine-protein kinase RCH1 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q9LHP4 | LRR receptor-like serine/threonine-protein kinase RGI1 OS=Arabidopsis thaliana OX=3702 GN=RGI1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166AMT2 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_010275 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.019405 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.757354 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.609621 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.292515 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.968194 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.354309 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.916508 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.440685 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 14.287244 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 15.058 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 17.580858 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 17.196964 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 14.995353 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 10.839421 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.164541 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.673138 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.750593 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.595776 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.696315 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.154351 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 3.009984 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.452202 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 4.323975 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 3.520788 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.882273 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 6.879398 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 9.9604 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 6.906835 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 8.405241 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.640875 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.011759 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.958277 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.353418 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.3723 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.383914 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.293163 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.563011 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.224793 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 12.039213 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 13.61207 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 7.280704 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.034358 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.069987 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.515846 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.417355 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.645988 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 7.875527 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 4.529053 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.251657 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg16239, jg23095, jg35487, jg37774, jg8632 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_18865, gene_4434, gene_6466 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah021152, Ah028241 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g056500, BVRB_3g056510 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59594, Sbi_jg63058 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23836 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018285 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl03023, Sgl08141 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000006469, gene:ENSEOMG00000015025 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.3AG0018170, CQ.Regalona.r1.3BG0018090 ... |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30014820, pistato.v30038140, pistato.v30240610 ... |
| Apiaceae | Apium graveolens | 3 | Ag10G00744, Ag3G01101, Ag9G01670 |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G021030, COCNU_07G009580, COCNU_10G007310 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103713757, gene-LOC103717746, gene-LOC103723304 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.322.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G09419, Ftri9G08675 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G24240.1, AT5G48940.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10002381m.g.v1.0, Thhalv10003549m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g19310.v2.2, Sp3g21670.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g037600.2N, BniB07g037620.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq03G1944, Ceq06G2028, Ceq07G0784 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl03G2092, Cgl06G2135, Cgl07G0836 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g03570 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g04640, gene.Thate08g23830 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-12264, nbisL1-mrna-12265 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG04.1513, evm.TU.LG06.741, evm.TU.LG11.636 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00015123, Pov_00024534 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G14994, Lb2G14995, Lb3G20572 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.147, BH09.225, CH09.197 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0327140, gene-QOZ80_4BG0359100 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0097060.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_033606, gene-QYE76_033612 |
| Poaceae | Oryza coarctata | 1 | Oco08G000830 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g04330.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_06G021100, gene-BS78_06G021300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0306099 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr25G016050, Chr30G015270 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G045500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG001450, gene_TRIDC2BG001300 |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G012900.1, TraesCS2B02G005000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb419430_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-37400, nbis-gene-52727, nbis-gene-54703 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g19279, Zma_g20851 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG01.462, evm.TU.LG01.463, evm.TU.LG04.296 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g02750 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.Scaffold_5_RagTag.1183, evm.TU.Scaffold_6_RagTag.954 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-15721, nbisL1-mrna-9705 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-11275, nbisL1-mrna-21143, nbisL1-mrna-9060 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-11262, nbisL1-mrna-18125, nbisL1-mrna-820 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000006l.683, evm.TU.utg000011l.596 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00003123, Maker00008401, Maker00012962 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-20567, nbisL1-mrna-20676, nbisL1-mrna-22880 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-18625, nbisL1-mrna-19883, nbisL1-mrna-4345 |
| Salicaceae | Populus euphratica | 4 | populus_peu04034, populus_peu14849, populus_peu32527 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132610161, gene-LOC132610948, gene-LOC132627280 |
| Solanaceae | Solanum chilense | 3 | SOLCI004502100, SOLCI006644100, SOLCI006714900 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107018427, gene-LOC107029790, gene-LOC107029871 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6205 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G0461, TC12G0248 |
| Zosteraceae | Zostera marina | 1 | Zosma05g27400.v3.1 |