halophFGD

Basic Information

Locus ID: Ag3G01091

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: WD40-like Beta Propeller Repeat

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	49746500	49772889	+	Ag3G01091

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.08	30,314.59 Da	30.17	78.87	-0.40

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07676	WD40-like Beta Propeller Repeat	111	151	0.027	IPR011659
Pfam	PF07676	WD40-like Beta Propeller Repeat	180	194	0.0031	IPR011659
SUPERFAMILY	SSF82171	DPP6 N-terminal domain-like	27	254	7.59E-19	-
Gene3D	G3DSA:2.120.10.30	-	46	265	2.2E-21	IPR011042

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_017230908.1	PREDICTED: uncharacterized protein LOC108205453 [Daucus carota subsp. sativus]	0
TrEMBL	A0A166IAD9	Protein TolB OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003576 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.544829	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.580003	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.11468	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.235998	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.611846	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.296014	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.210987	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	1.022468	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	1.1508	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.366759	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	1.192816	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.510318	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.744825	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.458207	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.165976	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.224339	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.106965	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1.270699	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.080646	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.379213	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.270194	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	1.690792	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.092747	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.242213	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.041936		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.428753		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.041854		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.36007		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	1.161728		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.269958		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.264276	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.097461	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.816565	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	1.243786	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.554248	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.174879	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	1.297024	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.503807	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.232734	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	11	gene_12213, gene_12215, gene_12216, gene_7196, gene_7197 ... gene_7198, gene_7199, gene_7200, gene_7201, gene_7202, gene_7203
Amaranthaceae	Atriplex hortensis	1	Ah031551
Amaranthaceae	Beta vulgaris	6	BVRB_4g089400, BVRB_4g089410, BVRB_4g089450, BVRB_4g089460 ... BVRB_4g089520, BVRB_4g089530
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg18938, Sbi_jg18940, Sbi_jg37394, Sbi_jg37395 ... Sbi_jg37396
Amaranthaceae	Salicornia europaea	2	Seu_jg5232, Seu_jg5234
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00017415, GOSA_00017418
Amaranthaceae	Suaeda glauca	7	Sgl23475, Sgl28602, Sgl54511, Sgl54513, Sgl59850, Sgl71538 ... Sgl75116
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000005844, gene:ENSEOMG00000021703 ... gene:ENSEOMG00000025400, gene:ENSEOMG00000033699
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.4AG0023640, CQ.Regalona.r1.5BG0017600 ... CQ.Regalona.r1.7AG0023140, CQ.Regalona.r1.7AG0023150
Apiaceae	Apium graveolens	9	Ag10G01555, Ag3G01091, Ag3G01092, Ag7G02070, Ag7G02072 ... Ag7G02076, Ag7G02077, Ag7G02078, Ag7G02080
Asparagaceae	Asparagus officinalis	2	AsparagusV1_07.2391.V1.1, AsparagusV1_Unassigned.198.V1.1
Poaceae	Echinochloa crus-galli	12	AH04.434, AH05.523, AH05.525, AH08.356, AH08.708, BH05.577 ... BH05.579, CH04.475, CH05.654, CH05.656, Contig1934.2, Contig522.11
Poaceae	Eleusine coracana subsp. coracana	14	gene-QOZ80_4BG0352250, gene-QOZ80_6AG0505730 ... gene-QOZ80_6AG0517360, gene-QOZ80_6BG0457770, gene-QOZ80_6BG0469340, gene-QOZ80_6BG0469350, gene-QOZ80_9AG0677600, gene-QOZ80_9AG0681550, gene-QOZ80_9AG0681610, gene-QOZ80_9AG0681850, gene-QOZ80_9AG0686610, gene-QOZ80_9BG0701290, gene-QOZ80_9BG0706450, gene-QOZ80_9BG0712830
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.4HG0381190.1.CDS1 ... HORVU.MOREX.r3.5HG0420780.1, HORVU.MOREX.r3.7HG0635330.2, HORVU.MOREX.r3.7HG0635370.1
Poaceae	Lolium multiflorum	5	gene-QYE76_002233, gene-QYE76_008565, gene-QYE76_008610 ... gene-QYE76_010254, gene-QYE76_068397
Poaceae	Oryza coarctata	2	Oco05G011910, Oco06G014520
Poaceae	Oryza sativa	3	LOC_Os03g19990.1, LOC_Os03g28980.1, LOC_Os12g24330.1
Poaceae	Paspalum vaginatum	3	gene-BS78_05G244700, gene-BS78_05G265800, gene-BS78_K297700
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0401391, Pt_Chr0401407, Pt_Chr0404116, Pt_Chr0703511
Poaceae	Sporobolus alterniflorus	4	Chr16G007380, Chr17G006720, Chr26G000170, Chr31G004380
Poaceae	Thinopyrum elongatum	9	Tel3E01G844700, Tel5E01G025800, Tel5E01G888400 ... Tel5E01G888500, Tel6E01G109300, Tel6E01G109500, Tel6E01G109800, Tel6E01G113300, Tel7E01G748000
Poaceae	Triticum dicoccoides	12	gene_TRIDC3BG083400, gene_TRIDC4AG047760 ... gene_TRIDC4AG072200, gene_TRIDC5AG001880, gene_TRIDC5BG001630, gene_TRIDC5BG083370, gene_TRIDC6AG006960, gene_TRIDC6BG007070, gene_TRIDC6BG007170, gene_TRIDC6BG009850, gene_TRIDC7AG001000, gene_TRIDC7BG055080
Poaceae	Triticum aestivum	22	TraesCS3B02G577400.1, TraesCS3D02G516400.1 ... TraesCS4A02G124500.1, TraesCS4A02G484600.1, TraesCS4B02G180000.1.cds1, TraesCS5A02G011600.1, TraesCS5B02G009500.1, TraesCS5D02G016500.1, TraesCS5D02G550100.1, TraesCS6A02G057900.1, TraesCS6B02G056200.1, TraesCS6B02G056600.1, TraesCS6B02G057400.1, TraesCS6B02G082900.2, TraesCS6D02G047500.2, TraesCS6D02G047800.2, TraesCS6D02G058200.1, TraesCS7A02G010400.2, TraesCS7B02G344500.1, TraesCS7D02G010100.1, TraesCS7D02G434600.1, TraesCSU02G061800.1
Poaceae	Zea mays	1	Zm00001eb418440_P002
Poaceae	Zoysia japonica	1	nbis-gene-38693
Poaceae	Zoysia macrostachya	1	Zma_g17878
Portulacaceae	Portulaca oleracea	12	evm.TU.LG02.525, evm.TU.LG02.527, evm.TU.LG02.534 ... evm.TU.LG02.535, evm.TU.LG02.538, evm.TU.LG02.542, evm.TU.LG09.1768, evm.TU.LG09.1775, evm.TU.LG09.1778, evm.TU.LG09.1779, evm.TU.LG09.1782, evm.TU.LG09.1786
Posidoniaceae	Posidonia oceanica	4	gene.Posoc07g01380, gene.Posoc07g01390, gene.Posoc07g01450 ... gene.Posoc07g01460
Tamaricaceae	Tamarix chinensis	7	TC04G1422, TC04G1429, TC04G1437, TC04G1443, TC04G1451 ... TC04G1454, TC04G1456