Basic Information
Locus ID:
Ag3G01075
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 48695730 | 48702073 | - | Ag3G01075 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.16 | 37,731.00 Da | 43.53 | 87.86 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 61 | 106 | 2.8E-10 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 61 | 139 | 8.24E-17 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 50 | 141 | 6.0E-13 | - |
| SMART | SM00256 | fbox_2 | 63 | 103 | 1.1E-8 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 57 | 103 | 11.299088 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21760.1 | F-box protein 7. This gene is predicted to encode an F-box protein that is evolutionarily conserved between Arabidopsis and other eukaryotes including S.cerevisiae and humans. It may play a role in regulating translation under conditions of temperature stress. FBP7 transcript levels are increased at high and low temperatures. | 0 |
| RefSeq | XP_017220362.1 | PREDICTED: F-box protein 7 [Daucus carota subsp. sativus] | 0 |
| Q9XI00 | F-box protein 7 OS=Arabidopsis thaliana OX=3702 GN=SKIP32 PE=1 SV=1 | 0 | |
| TrEMBL | A0A068UTG3 | F-box domain-containing protein OS=Coffea canephora OX=49390 GN=GSCOC_T00031885001 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 17.709412 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 15.772516 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 15.215293 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 15.588766 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 14.748987 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 19.059004 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 15.653144 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 14.262885 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 22.182919 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 20.037548 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 21.894043 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 24.702946 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 19.059958 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 20.048613 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 25.287916 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 21.257568 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 24.087706 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 27.478607 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 27.774334 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 27.647512 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 37.487873 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 22.808712 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 26.208973 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 25.485497 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 23.29306 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 29.798363 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 29.864071 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 25.147697 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 27.0767 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 21.992414 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 23.215479 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 22.749569 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 30.37269 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 34.256535 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 29.935783 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 32.703281 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 15.644417 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 21.421825 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 16.859615 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 18.91888 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 16.560247 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 73.805496 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 64.715981 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 75.682999 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 68.995117 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 73.473885 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 54.045437 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 36.647511 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 42.655888 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 39.820324 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12087 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23006 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023667 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g109510 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4219, Sbi_jg49584 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5657 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000997 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl10616, Sgl15869 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014347, gene:ENSEOMG00000034019 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1AG0010260 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30039660 |
| Apiaceae | Apium graveolens | 1 | Ag3G01075 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G002180 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701268 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.957.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri16G30484, FtriNA05041, FtriNA11569 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G21760.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10008543m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g19320.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g036590.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1800 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1974 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g07680 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0276s00016.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g13770 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.877 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00027557, Pov_00037824 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G23066 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1021, BH09.1095, CH09.1230 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0317380, gene-QOZ80_4BG0348710 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0168640.1 |
| Poaceae | Oryza coarctata | 1 | Oco07G006000 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g35190.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_06G096700, gene-BS78_06G098100 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0302676, Pt_Chr0302710, Pt_Chr0302712, Pt_Chr0302715 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G012960, Chr25G011250, Chr26G006610, Chr30G010830 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G535400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG044010, gene_TRIDC2BG046710 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G303500.1, TraesCS2B02G320100.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb082740_P001, Zm00001eb422580_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-7665 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21287 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.764, evm.TU.LG04.19 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc05g20050, gene.Posoc05g20100, gene.Posoc05g20120 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1111 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18735 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5573 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13103 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.433 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011692 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8129 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9827 |
| Salicaceae | Populus euphratica | 2 | populus_peu14742, populus_peu32421 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627002 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002852 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3242 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G2233 |
| Zosteraceae | Zostera marina | 1 | Zosma05g11670.v3.1 |