halophFGD

Basic Information

Locus ID: Ag3G01056

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: inactive receptor kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	47127249	47130072	-	Ag3G01056

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.81	68,280.33 Da	29.27	97.44	-0.05

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd14066	STKc_IRAK	369	632	7.39568E-86	-
Pfam	PF08263	Leucine rich repeat N-terminal domain	24	60	2.3E-7	IPR013210
Pfam	PF00069	Protein kinase domain	366	627	1.2E-37	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	367	628	6.93E-62	IPR011009
SUPERFAMILY	SSF52058	L domain-like	42	208	4.21E-32	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	438	633	2.1E-51	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	348	437	7.2E-20	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	25	135	1.8E-21	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	139	226	4.5E-16	IPR032675
ProSiteProfiles	PS50011	Protein kinase domain profile.	363	632	33.347065	IPR000719

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G48480.1	receptor-like kinase 1. Arabidopsis thaliana receptor-like protein kinase (RKL1) gene
RefSeq	XP_017237317.1	PREDICTED: probable inactive receptor kinase At1g48480 [Daucus carota subsp. sativus]
Swiss-Prot	Q9LP77	Probable inactive receptor kinase At1g48480 OS=Arabidopsis thaliana OX=3702 GN=RKL1 PE=1 SV=1
TrEMBL	A0A166BTW5	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011622 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.854015	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	1.654804	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	1.205823	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	1.379147	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	1.51722	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.514606	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.55871	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.212578	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	39.065685	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	36.920906	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	45.875084	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	37.562965	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	33.880348	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	27.6695	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	5.055512	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	8.218334	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	9.458259	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	11.934405	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	13.560976	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	5.783214	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	8.352627	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	10.451143	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	11.422194	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	13.599529	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	8.976701	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	16.120621	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	13.987946	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	12.632672	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	14.601434	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	4.381041		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	7.709716		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	7.500333		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	2.15544		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	11.243505		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	1.59264		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	3.684913		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	2.872078		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	2.358071		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	44.724895	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	17.235302	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	8.646278	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.063657	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.096123	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.687634	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.932985	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.120076	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	1.124991	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	18.33889	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	13.761029	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	17.959286	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	10	jg13417, jg17099, jg20012, jg25558, jg25817, jg27091, jg5143 ... jg31036, jg39583, jg7360
Aizoaceae	Mesembryanthemum crystallinum	2	gene_1156, gene_24720
Amaranthaceae	Atriplex hortensis	3	Ah023589, Ah028848, Ah033325
Amaranthaceae	Beta vulgaris	2	BVRB_1g005410, BVRB_2g039200
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg19507, Sbi_jg28953, Sbi_jg2986, Sbi_jg44057
Amaranthaceae	Salicornia europaea	2	Seu_jg17898, Seu_jg6896
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00000942, GOSA_00010611
Amaranthaceae	Suaeda glauca	4	Sgl11836, Sgl15933, Sgl64817, Sgl69279
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000013294, gene:ENSEOMG00000015178 ... gene:ENSEOMG00000017712, gene:ENSEOMG00000033516, gene:ENSEOMG00000050042, gene:ENSEOMG00000050553
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0009760, CQ.Regalona.r1.1BG0016000 ... CQ.Regalona.r1.2AG0007850, CQ.Regalona.r1.2BG0009230
Anacardiaceae	Pistacia vera	2	pistato.v30148970, pistato.v30190180
Apiaceae	Apium graveolens	7	Ag10G02909, Ag11G05065, Ag3G01039, Ag3G01056, Ag6G00588 ... Ag7G01530, Ag7G02026
Arecaceae	Cocos nucifera	5	COCNU_02G005350, COCNU_02G008470, COCNU_03G009790 ... scaffold062488G000010, scaffold062488G000020
Arecaceae	Phoenix dactylifera	4	gene-LOC103695856, gene-LOC103701099, gene-LOC103717354 ... gene-LOC103723357
Asparagaceae	Asparagus officinalis	5	AsparagusV1_03.1561.V1.1, AsparagusV1_04.50.V1.1 ... AsparagusV1_05.2283.V1.1, AsparagusV1_06.548.V1.1, AsparagusV1_08.1259.V1.1
Asteraceae	Flaveria trinervia	3	Ftri13G01034, Ftri18G26677, Ftri8G02804
Brassicaceae	Arabidopsis thaliana	4	AT1G48480.1, AT3G02880.1, AT3G17840.1, AT5G16590.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10011300m.g.v1.0, Thhalv10012966m.g.v1.0 ... Thhalv10020262m.g.v1.0, Thhalv10020304m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g35430.v2.2, Sp3g01920.v2.2, Sp3g15960.v2.2 ... Sp6g27580.v2.2
Brassicaceae	Brassica nigra	7	BniB01g046950.2N, BniB01g061510.2N, BniB02g046280.2N ... BniB05g022580.2N, BniB07g007430.2N, BniB07g052340.2N, BniB07g061020.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G2804, Ceq08G0627
Casuarinaceae	Casuarina glauca	2	Cgl03G2958, Cgl08G0599
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno05g11540, gene.Cymno09g02460, gene.Cymno11g08540
Hydrocharitaceae	Thalassia testudinum	7	gene.Thate01g10530, gene.Thate01g11630, gene.Thate02g25670 ... gene.Thate04g21390, gene.Thate04g24080, gene.Thate05g23660, gene.Thate08g18350
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-6524
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.619, evm.TU.LG10.145
Plantaginaceae	Plantago ovata	4	Pov_00019978, Pov_00019979, Pov_00021142, Pov_00033187
Plumbaginaceae	Limonium bicolor	3	Lb1G02086, Lb1G02122, Lb3G16648
Poaceae	Echinochloa crus-galli	6	AH01.4486, AH01.843, BH01.986, CH01.1033, CH01.5100 ... Contig192.128
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_3AG0219010, gene-QOZ80_3AG0239310 ... gene-QOZ80_3BG0264230, gene-QOZ80_3BG0288730
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.4HG0337200.1, HORVU.MOREX.r3.4HG0344020.1 ... HORVU.MOREX.r3.4HG0395580.1
Poaceae	Lolium multiflorum	2	gene-QYE76_062429, gene-QYE76_069729
Poaceae	Oryza coarctata	4	Oco05G006810, Oco05G021720, Oco06G007030, Oco06G022490
Poaceae	Oryza sativa	2	LOC_Os03g12250.1, LOC_Os03g50450.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G106300, gene-BS78_01G433900
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0101805, Pt_Chr0101842, Pt_Chr0105032
Poaceae	Sporobolus alterniflorus	8	Chr01G007030, Chr01G028160, Chr04G001090, Chr04G027030 ... Chr07G010330, Chr07G026000, Chr12G011270, Chr12G030440
Poaceae	Thinopyrum elongatum	2	Tel4E01G083300, Tel4E01G412900
Poaceae	Triticum dicoccoides	4	gene_TRIDC4AG008750, gene_TRIDC4AG041730 ... gene_TRIDC4BG007320, gene_TRIDC4BG042350
Poaceae	Triticum aestivum	6	TraesCS4A02G064200.1, TraesCS4A02G267300.1 ... TraesCS4B02G047100.1, TraesCS4B02G241500.1, TraesCS4D02G046900.1, TraesCS4D02G241100.1
Poaceae	Zea mays	11	Zm00001eb054960_P001, Zm00001eb076660_P001 ... Zm00001eb130540_P001, Zm00001eb216290_P001, Zm00001eb285120_P001, Zm00001eb305120_P001, Zm00001eb375360_P001, Zm00001eb393100_P001, Zm00001eb399890_P002, Zm00001eb399900_P002, Zm00001eb411560_P001
Poaceae	Zoysia japonica	5	nbis-gene-14829, nbis-gene-15924, nbis-gene-2435 ... nbis-gene-4035, nbis-gene-57036
Poaceae	Zoysia macrostachya	4	Zma_g1753, Zma_g2953, Zma_g4125, Zma_g642
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.720, evm.TU.LG04.1617, evm.TU.LG04.56 ... evm.TU.LG05.1276, evm.TU.LG10.1282, evm.TU.LG25.6
Posidoniaceae	Posidonia oceanica	4	gene.Posoc01g24600, gene.Posoc02g27890, gene.Posoc08g00570 ... gene.Posoc08g00840
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_11_RagTag.756, evm.TU.Scaffold_3_RagTag.1872 ... evm.TU.Scaffold_4_RagTag.683, evm.TU.Scaffold_6_RagTag.1307
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-14429, nbisL1-mrna-16303, nbisL1-mrna-28679
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-3256, nbisL1-mrna-4583, nbisL1-mrna-7179
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-1148, nbisL1-mrna-12364, nbisL1-mrna-1684
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000008l.438, evm.TU.utg000011l.852 ... evm.TU.utg000061l.35
Rhizophoraceae	Kandelia obovata	3	Maker00000169, Maker00007527, Maker00008636
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-13451, nbisL1-mrna-14466, nbisL1-mrna-18084 ... nbisL1-mrna-919
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-1645, nbisL1-mrna-3927, nbisL1-mrna-8424 ... nbisL1-mrna-8631
Salicaceae	Populus euphratica	6	populus_peu02286, populus_peu02287, populus_peu09671 ... populus_peu24853, populus_peu28222, populus_peu29687
Solanaceae	Lycium barbarum	4	gene-LOC132599688, gene-LOC132614133, gene-LOC132625801 ... gene-LOC132644365
Solanaceae	Solanum chilense	4	SOLCI001789600, SOLCI002608400, SOLCI005609200 ... SOLCI006474700
Solanaceae	Solanum pennellii	4	gene-LOC107004705, gene-LOC107008537, gene-LOC107014432 ... gene-LOC107023065
Tamaricaceae	Reaumuria soongarica	2	STRG.17829_chr09_-, STRG.21656_chr08_+
Tamaricaceae	Tamarix chinensis	1	TC05G1822
Zosteraceae	Zostera marina	2	Zosma03g35770.v3.1, Zosma06g09330.v3.1