halophFGD

Basic Information

Locus ID: Ag3G01055

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: serine threonine protein kinase IREH1

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	47106558	47125316	+	Ag3G01055

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.74	142,058.77 Da	49.46	78.44	-0.51

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd05579	STKc_MAST_like	879	1167	1.37267E-173	-
Pfam	PF00069	Protein kinase domain	873	1162	1.0E-65	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	870	1203	4.86E-93	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	957	1180	5.7E-109	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	871	1191	5.7E-109	-
SMART	SM00220	serkin_6	873	1162	9.3E-108	IPR000719
ProSiteProfiles	PS51285	AGC-kinase C-terminal domain profile.	1163	1267	10.229458	IPR000961
ProSiteProfiles	PS50011	Protein kinase domain profile.	873	1162	52.088749	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	992	1004	-	IPR008271
MobiDBLite	mobidb-lite	consensus disorder prediction	125	243	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	89	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1210	1226	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	9	39	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	191	235	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1207	1229	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	717	736	-	-
Coils	Coil	Coil	303	323	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0004674 (protein serine/threonine kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K08789 (MAST-subfamily protein kinase [EC:2.7.11.37])

Best hit

Source	Best Hit ID	Description
TAIR	AT3G17850.1	Protein kinase superfamily protein.
RefSeq	XP_017228178.1	PREDICTED: probable serine/threonine protein kinase IREH1 [Daucus carota subsp. sativus]
Swiss-Prot	F4J6F6	Probable serine/threonine protein kinase IREH1 OS=Arabidopsis thaliana OX=3702 GN=IREH1 PE=1 SV=1
TrEMBL	A0A166I945	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003537 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	13.477098	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	11.684573	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	12.281651	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	14.397408	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	14.257555	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	14.62402	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	15.496953	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	13.270925	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	25.053059	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	24.700417	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	25.714386	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	22.187567	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	22.780056	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	19.717518	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	11.691833	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	12.385654	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	11.455219	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	16.213213	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	12.494524	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	14.503869	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	17.038172	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	10.388273	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	11.659787	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	9.325727	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	12.434775	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	19.292191	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	15.095726	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	15.943183	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	17.587526	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	4.847986		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	7.217954		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	4.298646		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	7.689842		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	6.086857		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	7.83091		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	5.514632		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	3.165774		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	4.028311		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	12.923837	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	11.723342	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	9.860684	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	19.608955	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	17.285524	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	20.2271	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	17.37479	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	15.153603	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	16.464809	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	12.597966	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	14.300609	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	12.200624	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg11895, jg13416, jg14090, jg2403, jg27090
Aizoaceae	Mesembryanthemum crystallinum	2	gene_11329, gene_3126
Amaranthaceae	Atriplex hortensis	2	Ah016226, Ah019186
Amaranthaceae	Beta vulgaris	1	BVRB_3g055890
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg15360, Sbi_jg40659, Sbi_jg50667, Sbi_jg56178
Amaranthaceae	Salicornia europaea	2	Seu_jg2220, Seu_jg26649
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00019219, GOSA_00020260, GOSA_00020261
Amaranthaceae	Suaeda glauca	7	Sgl02161, Sgl07321, Sgl44513, Sgl44514, Sgl49280, Sgl64025 ... Sgl68496
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000009334, gene:ENSEOMG00000028581 ... gene:ENSEOMG00000035037, gene:ENSEOMG00000046123
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.3AG0000780, CQ.Regalona.r1.3BG0000820 ... CQ.Regalona.r1.8AG0010470, CQ.Regalona.r1.8BG0012620
Anacardiaceae	Pistacia vera	3	pistato.v30046270, pistato.v30148980, pistato.v30181260
Apiaceae	Apium graveolens	4	Ag2G02617, Ag3G00187, Ag3G01055, Ag7G02027
Arecaceae	Cocos nucifera	4	COCNU_01G003300, COCNU_06G009490, COCNU_14G006280 ... scaffold003371G000050
Arecaceae	Phoenix dactylifera	5	gene-LOC103695655, gene-LOC103713940, gene-LOC103714641 ... gene-LOC103716283, gene-LOC103721249
Asparagaceae	Asparagus officinalis	5	AsparagusV1_03.1551.V1.1, AsparagusV1_03.2398.V1.1 ... AsparagusV1_07.3585.V1.1, AsparagusV1_08.1150.V1.1, AsparagusV1_08.1151.V1.1
Asteraceae	Flaveria trinervia	5	Ftri16G05803, Ftri17G13264, Ftri18G30888, Ftri8G24984 ... Ftri9G07824
Brassicaceae	Arabidopsis thaliana	4	AT1G45160.2, AT1G48490.1, AT3G17850.1, AT5G62310.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10003543m.g.v1.0, Thhalv10011190m.g.v1.0 ... Thhalv10011200m.g.v1.0, Thhalv10019909m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g33960.v2.2, Sp1g35440.v2.2, Sp2g25500.v2.2 ... Sp3g15970.v2.2
Brassicaceae	Brassica nigra	6	BniB01g046940.2N, BniB04g062320.2N, BniB06g010570.2N ... BniB07g007420.2N, BniB07g009940.2N, BniB07g052330.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G2001, Ceq03G1616, Ceq03G2806
Casuarinaceae	Casuarina glauca	3	Cgl02G2077, Cgl03G1742, Cgl03G2960
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno08g02250, gene.Cymno11g08390, gene.Cymno14g06440
Dunaliellaceae	Dunaliella salina	1	Dusal.0055s00027.v1.0
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate04g07170, gene.Thate05g16720, gene.Thate08g15560 ... gene.Thate09g21410
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-1312
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.2297, evm.TU.LG06.554, evm.TU.LG10.47
Plantaginaceae	Plantago ovata	3	Pov_00012476, Pov_00019977, Pov_00026733
Plumbaginaceae	Limonium bicolor	6	Lb1G04450, Lb1G07369, Lb2G09477, Lb3G16647, Lb4G22592 ... Lb6G32390
Poaceae	Echinochloa crus-galli	5	AH01.850, BH01.993, BH05.4209, CH01.1037, CH05.4434
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_3AG0219040, gene-QOZ80_3BG0264280 ... gene-QOZ80_5AG0398560, gene-QOZ80_5BG0447150
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.4HG0337140.1, HORVU.MOREX.r3.5HG0425520.1
Poaceae	Lolium multiflorum	4	gene-QYE76_001088, gene-QYE76_001181, gene-QYE76_062436 ... gene-QYE76_062881
Poaceae	Oryza coarctata	4	Oco05G021670, Oco06G022440, Oco23G010790, Oco24G010600
Poaceae	Oryza sativa	2	LOC_Os03g50390.1, LOC_Os12g42660.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G106800, gene-BS78_08G154000
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0105038, Pt_Chr0704574, Pt_Chr0704937
Poaceae	Sporobolus alterniflorus	7	Chr01G007060, Chr04G019460, Chr04G026960, Chr06G020290 ... Chr07G025940, Chr07G025960, Chr12G030400
Poaceae	Thinopyrum elongatum	4	Tel4E01G082800, Tel5E01G064300, Tel7E01G1017800 ... Tel7E01G1018000
Poaceae	Triticum dicoccoides	4	gene_TRIDC4AG041780, gene_TRIDC4BG007260 ... gene_TRIDC5AG003820, gene_TRIDC5BG003940
Poaceae	Triticum aestivum	6	TraesCS4A02G267800.1, TraesCS4B02G046600.2 ... TraesCS4D02G045500.2, TraesCS5A02G025700.1, TraesCS5B02G025000.1, TraesCS5D02G033500.1
Poaceae	Zea mays	4	Zm00001eb054830_P004, Zm00001eb134490_P004 ... Zm00001eb216330_P001, Zm00001eb216350_P001
Poaceae	Zoysia japonica	4	nbis-gene-14823, nbis-gene-47463, nbis-gene-47464 ... nbis-gene-55722
Poaceae	Zoysia macrostachya	2	Zma_g26161, Zma_g645
Portulacaceae	Portulaca oleracea	5	evm.TU.LG03.2105, evm.TU.LG04.2560, evm.TU.LG08.67 ... evm.TU.LG11.1532, evm.TU.LG11.1533
Posidoniaceae	Posidonia oceanica	3	gene.Posoc05g05750, gene.Posoc06g18320, gene.Posoc08g00470
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_11_RagTag.1280, evm.TU.Scaffold_4_RagTag.241 ... evm.TU.Scaffold_11_RagTag.755, evm.TU.Scaffold_4_RagTag.684, evm.TU.Scaffold_7_RagTag.564
Rhizophoraceae	Carallia pectinifolia	7	nbisL1-mrna-12590, nbisL1-mrna-14428, nbisL1-mrna-19064 ... nbisL1-mrna-22849, nbisL1-mrna-22866, nbisL1-mrna-28678, nbisL1-mrna-29110
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-1820, nbisL1-mrna-3255, nbisL1-mrna-6865
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-1683, nbisL1-mrna-2055, nbisL1-mrna-21842
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000002l.558, evm.TU.utg000002l.559 ... evm.TU.utg000008l.152, evm.TU.utg000008l.439, evm.TU.utg000010l.317
Rhizophoraceae	Kandelia obovata	4	Maker00000108, Maker00000882, Maker00008935, Maker00012042
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-14465, nbisL1-mrna-2426, nbisL1-mrna-5864
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-12497, nbisL1-mrna-1646, nbisL1-mrna-6175
Salicaceae	Populus euphratica	9	populus_peu02285, populus_peu28223, populus_peu29131 ... populus_peu29147, populus_peu29148, populus_peu29688, populus_peu30510, populus_peu30706, populus_peu30707
Solanaceae	Lycium barbarum	4	gene-LOC132599703, gene-LOC132627994, gene-LOC132631746 ... gene-LOC132633182
Solanaceae	Solanum chilense	4	SOLCI000573700, SOLCI001211100, SOLCI001545600 ... SOLCI002608300
Solanaceae	Solanum pennellii	4	gene-LOC107014531, gene-LOC107015508, gene-LOC107018194 ... gene-LOC107023064
Tamaricaceae	Reaumuria soongarica	4	gene_12667, gene_1947, gene_4102, gene_471
Tamaricaceae	Tamarix chinensis	4	TC04G2243, TC05G0255, TC05G0913, TC06G1466
Zosteraceae	Zostera marina	3	Zosma03g35590.v3.1, Zosma05g00840.v3.1, Zosma05g24440.v3.1