halophFGD

Basic Information

Locus ID: Ag3G01039

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: inactive receptor kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	46345974	46346790	-	Ag3G01039

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.86	25,504.35 Da	31.29	103.32	0.03

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF08263	Leucine rich repeat N-terminal domain	26	61	1.8E-6	IPR013210
SUPERFAMILY	SSF52058	L domain-like	46	205	4.91E-32	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	135	224	2.6E-18	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	27	134	3.9E-25	IPR032675

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G48480.1	receptor-like kinase 1. Arabidopsis thaliana receptor-like protein kinase (RKL1) gene
RefSeq	XP_017240708.1	PREDICTED: probable inactive receptor kinase At1g48480 [Daucus carota subsp. sativus]
Swiss-Prot	Q9LP77	Probable inactive receptor kinase At1g48480 OS=Arabidopsis thaliana OX=3702 GN=RKL1 PE=1 SV=1
TrEMBL	A0A166BUM4	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011652 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.475346	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	1.518066	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	2.292321	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	1.777645	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.790917	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.885153	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.073684	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.222844	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.269148	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.353606	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.030219	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.304617	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	2.045492	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	1.00331	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	1.095611	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	3.502022	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	2.407416	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	2.51596	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	3.175577	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	2.267102	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	1.04007	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	1.362877	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	1.782417	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.326468	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.126671	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.176266	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.021162	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	1.929283	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	10	jg13417, jg17099, jg20012, jg25558, jg25817, jg27091, jg5143 ... jg31036, jg39583, jg7360
Aizoaceae	Mesembryanthemum crystallinum	2	gene_1156, gene_24720
Amaranthaceae	Atriplex hortensis	3	Ah023589, Ah028848, Ah033325
Amaranthaceae	Beta vulgaris	2	BVRB_1g005410, BVRB_2g039200
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg19507, Sbi_jg28953, Sbi_jg2986, Sbi_jg44057
Amaranthaceae	Salicornia europaea	2	Seu_jg17898, Seu_jg6896
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00000942, GOSA_00010611
Amaranthaceae	Suaeda glauca	4	Sgl11836, Sgl15933, Sgl64817, Sgl69279
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000013294, gene:ENSEOMG00000015178 ... gene:ENSEOMG00000017712, gene:ENSEOMG00000033516, gene:ENSEOMG00000050042, gene:ENSEOMG00000050553
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0009760, CQ.Regalona.r1.1BG0016000 ... CQ.Regalona.r1.2AG0007850, CQ.Regalona.r1.2BG0009230
Anacardiaceae	Pistacia vera	2	pistato.v30148970, pistato.v30190180
Apiaceae	Apium graveolens	7	Ag10G02909, Ag11G05065, Ag3G01039, Ag3G01056, Ag6G00588 ... Ag7G01530, Ag7G02026
Arecaceae	Cocos nucifera	5	COCNU_02G005350, COCNU_02G008470, COCNU_03G009790 ... scaffold062488G000010, scaffold062488G000020
Arecaceae	Phoenix dactylifera	4	gene-LOC103695856, gene-LOC103701099, gene-LOC103717354 ... gene-LOC103723357
Asparagaceae	Asparagus officinalis	5	AsparagusV1_03.1561.V1.1, AsparagusV1_04.50.V1.1 ... AsparagusV1_05.2283.V1.1, AsparagusV1_06.548.V1.1, AsparagusV1_08.1259.V1.1
Asteraceae	Flaveria trinervia	3	Ftri13G01034, Ftri18G26677, Ftri8G02804
Brassicaceae	Arabidopsis thaliana	4	AT1G48480.1, AT3G02880.1, AT3G17840.1, AT5G16590.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10011300m.g.v1.0, Thhalv10012966m.g.v1.0 ... Thhalv10020262m.g.v1.0, Thhalv10020304m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g35430.v2.2, Sp3g01920.v2.2, Sp3g15960.v2.2 ... Sp6g27580.v2.2
Brassicaceae	Brassica nigra	7	BniB01g046950.2N, BniB01g061510.2N, BniB02g046280.2N ... BniB05g022580.2N, BniB07g007430.2N, BniB07g052340.2N, BniB07g061020.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G2804, Ceq08G0627
Casuarinaceae	Casuarina glauca	2	Cgl03G2958, Cgl08G0599
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno05g11540, gene.Cymno09g02460, gene.Cymno11g08540
Hydrocharitaceae	Thalassia testudinum	7	gene.Thate01g10530, gene.Thate01g11630, gene.Thate02g25670 ... gene.Thate04g21390, gene.Thate04g24080, gene.Thate05g23660, gene.Thate08g18350
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-6524
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.619, evm.TU.LG10.145
Plantaginaceae	Plantago ovata	4	Pov_00019978, Pov_00019979, Pov_00021142, Pov_00033187
Plumbaginaceae	Limonium bicolor	3	Lb1G02086, Lb1G02122, Lb3G16648
Poaceae	Echinochloa crus-galli	6	AH01.4486, AH01.843, BH01.986, CH01.1033, CH01.5100 ... Contig192.128
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_3AG0219010, gene-QOZ80_3AG0239310 ... gene-QOZ80_3BG0264230, gene-QOZ80_3BG0288730
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.4HG0337200.1, HORVU.MOREX.r3.4HG0344020.1 ... HORVU.MOREX.r3.4HG0395580.1
Poaceae	Lolium multiflorum	2	gene-QYE76_062429, gene-QYE76_069729
Poaceae	Oryza coarctata	4	Oco05G006810, Oco05G021720, Oco06G007030, Oco06G022490
Poaceae	Oryza sativa	2	LOC_Os03g12250.1, LOC_Os03g50450.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G106300, gene-BS78_01G433900
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0101805, Pt_Chr0101842, Pt_Chr0105032
Poaceae	Sporobolus alterniflorus	8	Chr01G007030, Chr01G028160, Chr04G001090, Chr04G027030 ... Chr07G010330, Chr07G026000, Chr12G011270, Chr12G030440
Poaceae	Thinopyrum elongatum	2	Tel4E01G083300, Tel4E01G412900
Poaceae	Triticum dicoccoides	4	gene_TRIDC4AG008750, gene_TRIDC4AG041730 ... gene_TRIDC4BG007320, gene_TRIDC4BG042350
Poaceae	Triticum aestivum	6	TraesCS4A02G064200.1, TraesCS4A02G267300.1 ... TraesCS4B02G047100.1, TraesCS4B02G241500.1, TraesCS4D02G046900.1, TraesCS4D02G241100.1
Poaceae	Zea mays	11	Zm00001eb054960_P001, Zm00001eb076660_P001 ... Zm00001eb130540_P001, Zm00001eb216290_P001, Zm00001eb285120_P001, Zm00001eb305120_P001, Zm00001eb375360_P001, Zm00001eb393100_P001, Zm00001eb399890_P002, Zm00001eb399900_P002, Zm00001eb411560_P001
Poaceae	Zoysia japonica	5	nbis-gene-14829, nbis-gene-15924, nbis-gene-2435 ... nbis-gene-4035, nbis-gene-57036
Poaceae	Zoysia macrostachya	4	Zma_g1753, Zma_g2953, Zma_g4125, Zma_g642
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.720, evm.TU.LG04.1617, evm.TU.LG04.56 ... evm.TU.LG05.1276, evm.TU.LG10.1282, evm.TU.LG25.6
Posidoniaceae	Posidonia oceanica	4	gene.Posoc01g24600, gene.Posoc02g27890, gene.Posoc08g00570 ... gene.Posoc08g00840
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_11_RagTag.756, evm.TU.Scaffold_3_RagTag.1872 ... evm.TU.Scaffold_4_RagTag.683, evm.TU.Scaffold_6_RagTag.1307
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-14429, nbisL1-mrna-16303, nbisL1-mrna-28679
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-3256, nbisL1-mrna-4583, nbisL1-mrna-7179
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-1148, nbisL1-mrna-12364, nbisL1-mrna-1684
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000008l.438, evm.TU.utg000011l.852 ... evm.TU.utg000061l.35
Rhizophoraceae	Kandelia obovata	3	Maker00000169, Maker00007527, Maker00008636
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-13451, nbisL1-mrna-14466, nbisL1-mrna-18084 ... nbisL1-mrna-919
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-1645, nbisL1-mrna-3927, nbisL1-mrna-8424 ... nbisL1-mrna-8631
Salicaceae	Populus euphratica	6	populus_peu02286, populus_peu02287, populus_peu09671 ... populus_peu24853, populus_peu28222, populus_peu29687
Solanaceae	Lycium barbarum	4	gene-LOC132599688, gene-LOC132614133, gene-LOC132625801 ... gene-LOC132644365
Solanaceae	Solanum chilense	4	SOLCI001789600, SOLCI002608400, SOLCI005609200 ... SOLCI006474700
Solanaceae	Solanum pennellii	4	gene-LOC107004705, gene-LOC107008537, gene-LOC107014432 ... gene-LOC107023065
Tamaricaceae	Reaumuria soongarica	2	STRG.17829_chr09_-, STRG.21656_chr08_+
Tamaricaceae	Tamarix chinensis	1	TC05G1822
Zosteraceae	Zostera marina	2	Zosma03g35770.v3.1, Zosma06g09330.v3.1