Basic Information
Locus ID:
Ag3G01037
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the 'GDSL' lipolytic enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 45809630 | 45811346 | + | Ag3G01037 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.94 | 37,202.99 Da | 27.25 | 84.69 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01837 | SGNH_plant_lipase_like | 13 | 324 | 1.16522E-132 | IPR035669 |
| Pfam | PF00657 | GDSL-like Lipase/Acylhydrolase | 13 | 321 | 2.8E-30 | IPR001087 |
| SUPERFAMILY | SSF52266 | SGNH hydrolase | 13 | 327 | 1.98E-8 | - |
| Gene3D | G3DSA:3.40.50.1110 | SGNH hydrolase | 11 | 327 | 1.7E-75 | IPR036514 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37690.1 | SGNH hydrolase-type esterase superfamily protein. | 0 |
| RefSeq | XP_017237258.1 | PREDICTED: GDSL esterase/lipase At5g37690 [Daucus carota subsp. sativus] | 0 |
| Q9FHQ1 | GDSL esterase/lipase At5g37690 OS=Arabidopsis thaliana OX=3702 GN=At5g37690 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166BUN3 | GDSL esterase/lipase At5g37690-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011654 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 14.08415 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 109.581779 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 205.681854 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 192.757874 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 205.722092 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.665064 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.608037 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.166723 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 2.429874 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 4.536859 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 4.332675 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 4.364537 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 6.849078 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 4.742159 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.57044 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 8.319818 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.936389 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.035893 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.293502 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.562635 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.40124 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.276694 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.62107 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.274596 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.162474 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.126212 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.045324 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.169442 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.07043 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 15.264467 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.137125 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.423365 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.095418 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 75.614517 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 60.818287 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 80.285286 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17094 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24711 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g039250 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19491, Sbi_jg44047 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17901 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008644 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl35532 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000014457, gene:ENSEOMG00000022749 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0007800, CQ.Regalona.r1.2BG0009170 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30190250 |
| Apiaceae | Apium graveolens | 1 | Ag3G01037 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G002650 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721129 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.528.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G23364, Ftri6G07441 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G37690.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027814m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g04360.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g030290.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0632 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0605 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2638 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.612 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021136 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G13157 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.1058, AH07.3359, BH06.1097, BH07.3185, CH06.1195 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0144500, gene-QOZ80_2BG0199980 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0612750.1, HORVU.MOREX.r3.7HG0670040.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_024823, gene-QYE76_025072, gene-QYE76_029209 |
| Poaceae | Oryza coarctata | 3 | Oco03G020880, Oco11G006820, Oco12G006950 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g50000.1, LOC_Os06g14630.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G268000, gene-BS78_10G110400, gene-BS78_K034900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0203422, Pt_Chr0404511 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr09G020860, Chr11G018400, Chr13G005110, Chr14G005140 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G534700, Tel7E01G373800 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG044830, gene_TRIDC6BG052470 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS6A02G294300.1, TraesCS6A02G294800.2 ... |
| Poaceae | Zea mays | 3 | Zm00001eb190200_P001, Zm00001eb280670_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-45504, nbis-gene-50335, nbis-gene-8811 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g14363, Zma_g29462, Zma_g31702 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1555, evm.TU.LG07.1224 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.761 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1197 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4663 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6439 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.750 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012522 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5215 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13199 |
| Salicaceae | Populus euphratica | 2 | populus_peu09664, populus_peu24859 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132615907 |
| Solanaceae | Solanum chilense | 1 | SOLCI002449900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004131 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12838 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1823 |
| Zosteraceae | Zostera marina | 1 | Zosma02g18080.v3.1 |