halophFGD

Basic Information

Locus ID: Ag3G01015

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the eukaryotic ribosomal protein eS6 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	42755371	42757683	-	Ag3G01015

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
10.67	28,251.86 Da	38.42	78.35	-0.75

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01092	Ribosomal protein S6e	1	128	1.8E-55	IPR001377
Gene3D	G3DSA:1.20.5.2650	-	133	234	6.5E-38	-
SMART	SM01405	Ribosomal_S6e_2	1	128	2.7E-81	IPR001377
PIRSF	PIRSF002129	RPS6e	1	249	1.6E-117	IPR014401
ProSitePatterns	PS00578	Ribosomal protein S6e signature.	52	63	-	IPR018282
MobiDBLite	mobidb-lite	consensus disorder prediction	222	249	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	222	237	-	-
Coils	Coil	Coil	189	216	-	-

Gene Ontology

Biological Process:

GO:0006412 (translation)

Molecular Function:

GO:0003735 (structural constituent of ribosome)

Cellular Component:

GO:0005840 (ribosome)

KEGG Pathway

KO Term:

K02991 (small subunit ribosomal protein S6e)

Pathway:

ko01521 (EGFR tyrosine kinase inhibitor resistance) map01521 (EGFR tyrosine kinase inhibitor resistance) ko03010 (Ribosome) map03010 (Ribosome) ko04066 (HIF-1 signaling pathway) map04066 (HIF-1 signaling pathway) ko04150 (mTOR signaling pathway) map04150 (mTOR signaling pathway) ko04151 (PI3K-Akt signaling pathway) map04151 (PI3K-Akt signaling pathway) ko04371 (Apelin signaling pathway) map04371 (Apelin signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G31700.1	ribosomal protein S6. Encodes a putative ribosomal protein S6 (rps6a). RPS6A and RPS6B are fully redundant and essential during gametogenesis.
RefSeq	XP_017237597.1	PREDICTED: 40S ribosomal protein S6-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9M3V8	Small ribosomal subunit protein eS6 OS=Asparagus officinalis OX=4686 GN=rps6 PE=2 SV=1
TrEMBL	A0A166BV50	40S ribosomal protein S6 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011670 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	133.13797	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	93.943947	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	63.920002	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	67.837219	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	67.26696	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	62.652332	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	51.840565	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	38.785202	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	381.282257	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	381.134613	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	369.914398	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	414.096436	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	391.900177	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	381.433472	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	126.817345	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	192.732254	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	174.678162	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	148.083725	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	149.469635	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	207.448135	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	180.867966	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	241.938461	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	274.822693	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	261.847748	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	276.008209	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	167.269836	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	198.371399	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	149.598969	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	245.494125	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	118.877892		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	221.377899		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	230.767853		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	100.382278		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	223.065506		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	98.024483		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	109.37175		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	64.153084		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	82.17363		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	193.27919	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	76.511436	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	35.59967	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	326.31192	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	173.154236	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	356.980682	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	187.615387	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	417.343872	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	181.119995	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	367.96579	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	309.107666	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	273.019104	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg17043, jg20088, jg31102, jg39531
Aizoaceae	Mesembryanthemum crystallinum	1	gene_1449
Amaranthaceae	Atriplex hortensis	1	Ah023829
Amaranthaceae	Beta vulgaris	2	BVRB_1g008640, BVRB_1g008960
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg29357, Sbi_jg29358, Sbi_jg3585
Amaranthaceae	Salicornia europaea	2	Seu_jg6369, Seu_jg6370
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00000819, GOSA_00000837
Amaranthaceae	Suaeda glauca	5	Sgl11181, Sgl16580, Sgl45773, Sgl45812, Sgl50517
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000013772, gene:ENSEOMG00000034060 ... gene:ENSEOMG00000049024
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.1AG0011500, CQ.Regalona.r1.1BG0014460
Anacardiaceae	Pistacia vera	2	pistato.v30102990, pistato.v30203350
Apiaceae	Apium graveolens	2	Ag3G01015, Ag7G01473
Arecaceae	Cocos nucifera	3	COCNU_05G005690, COCNU_13G003310, scaffold001962G000100
Arecaceae	Phoenix dactylifera	4	gene-LOC103698471, gene-LOC103701774, gene-LOC103707954 ... gene-LOC103717963
Asparagaceae	Asparagus officinalis	4	AsparagusV1_03.1020.V1.1, AsparagusV1_03.1836.V1.1 ... AsparagusV1_03.293.V1.1, AsparagusV1_07.2800.V1.1
Asteraceae	Flaveria trinervia	3	Ftri16G11660, Ftri18G22432, Ftri6G05533
Brassicaceae	Arabidopsis thaliana	2	AT4G31700.1, AT5G10360.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10014497m.g.v1.0, Thhalv10026073m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp6g33090.v2.2, Sp7g29500.v2.2
Brassicaceae	Brassica nigra	5	BniB02g051580.2N, BniB03g010290.2N, BniB05g006270.2N ... BniB05g026730.2N, BniB08g004800.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G1316, Ceq06G1962
Casuarinaceae	Casuarina glauca	3	Cgl03G1418, Cgl06G2054, Cgl06G2071
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g02570, gene.Cymno03g12150
Dunaliellaceae	Dunaliella salina	1	Dusal.0276s00013.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate04g12270, gene.Thate05g11250
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-10149, nbisL1-mrna-6745
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.2470, evm.TU.LG08.1273
Plantaginaceae	Plantago ovata	3	Pov_00019055, Pov_00021994, Pov_00033518
Plumbaginaceae	Limonium bicolor	3	Lb1G05885, Lb3G20419, Lb5G27883
Poaceae	Echinochloa crus-galli	7	AH03.3741, AH05.3492, AH09.1990, BH03.4019, BH05.3498 ... CH03.4289, CH05.3641
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_5AG0390510, gene-QOZ80_5BG0437950 ... gene-QOZ80_7AG0577710, gene-QOZ80_7BG0609040
Poaceae	Lolium multiflorum	3	gene-QYE76_037264, gene-QYE76_039503, gene-QYE76_067518
Poaceae	Oryza coarctata	4	Oco05G015050, Oco06G015480, Oco13G013020, Oco14G013730
Poaceae	Oryza sativa	2	LOC_Os03g27260.1, LOC_Os07g42950.1
Poaceae	Paspalum vaginatum	2	gene-BS78_02G354600, gene-BS78_04G289600
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0502981, Pt_Chr0603286
Poaceae	Sporobolus alterniflorus	6	Chr04G015360, Chr06G015960, Chr19G002020, Chr24G015010 ... Chr27G015210, Chr28G011960
Poaceae	Thinopyrum elongatum	3	Tel2E01G147600, Tel2E01G147700, Tel2E01G323200
Poaceae	Triticum dicoccoides	6	gene_TRIDC2AG007270, gene_TRIDC2AG007320 ... gene_TRIDC2AG020690, gene_TRIDC2BG008450, gene_TRIDC2BG008460, gene_TRIDC2BG024590
Poaceae	Triticum aestivum	9	TraesCS2A02G066100.1, TraesCS2A02G066200.1 ... TraesCS2A02G163700.1, TraesCS2B02G078200.1, TraesCS2B02G078300.1, TraesCS2B02G189500.1, TraesCS2D02G064500.1, TraesCS2D02G064600.1, TraesCS2D02G170600.1
Poaceae	Zea mays	4	Zm00001eb109610_P001, Zm00001eb159700_P001 ... Zm00001eb327790_P002, Zm00001eb363770_P001
Poaceae	Zoysia japonica	3	nbis-gene-32978, nbis-gene-339, nbis-gene-36799
Poaceae	Zoysia macrostachya	3	Zma_g25066, Zma_g5576, Zma_g6879
Portulacaceae	Portulaca oleracea	2	evm.TU.LG04.1815, evm.TU.LG06.555
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g22790, gene.Posoc02g29630, gene.Posoc04g16110
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_6_RagTag.1689, evm.TU.Scaffold_7_RagTag.977 ... evm.TU.Scaffold_8_RagTag.761
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-18987, nbisL1-mrna-9484
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-10875, nbisL1-mrna-18030, nbisL1-mrna-19867
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-12078, nbisL1-mrna-20489, nbisL1-mrna-6807
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000002l.743, evm.TU.utg000011l.1023 ... evm.TU.utg000018l.511
Rhizophoraceae	Kandelia obovata	3	Maker00003635, Maker00007236, Maker00010699
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-13679, nbisL1-mrna-2995, nbisL1-mrna-8227
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-20305, nbisL1-mrna-3581
Salicaceae	Populus euphratica	7	populus_peu01411, populus_peu04508, populus_peu13742 ... populus_peu13743, populus_peu14587, populus_peu22901, populus_peu32240
Solanaceae	Lycium barbarum	3	gene-LOC132604271, gene-LOC132609561, gene-LOC132635582
Solanaceae	Solanum chilense	3	SOLCI001266200, SOLCI004789300, SOLCI005424400
Solanaceae	Solanum pennellii	3	gene-LOC107007396, gene-LOC107028817, gene-LOC107028861
Tamaricaceae	Reaumuria soongarica	4	STRG.10072_chr06_+, STRG.22643_chr10_+, STRG.26405_chr11_+ ... gene_16034
Tamaricaceae	Tamarix chinensis	2	TC03G1608, TC09G1783
Zosteraceae	Zostera marina	3	Zosma01g29500.v3.1, Zosma01g29530.v3.1, Zosma03g23900.v3.1