halophFGD

Basic Information

Locus ID: Ag3G01011

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Phospho-2-dehydro-3-deoxyheptonate aldolase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	42577424	42581383	-	Ag3G01011

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.69	55,955.50 Da	44.68	82.14	-0.29

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01474	Class-II DAHP synthetase family	46	482	1.7E-194	IPR002480
SUPERFAMILY	SSF51569	Aldolase	38	486	3.74E-197	-
Gene3D	G3DSA:3.20.20.70	Aldolase class I	223	487	1.9E-107	IPR013785
TIGRFAM	TIGR01358	DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase	46	488	1.6E-224	IPR002480

Gene Ontology

Biological Process:

GO:0009073 (aromatic amino acid family biosynthetic process)

Molecular Function:

GO:0003824 (catalytic activity) GO:0003849 (3-deoxy-7-phosphoheptulonate synthase activity)

KEGG Pathway

KO Term:

K01626 (3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54])

Pathway:

ko00400 (Phenylalanine, tyrosine and tryptophan biosynthesis) map00400 (Phenylalanine, tyrosine and tryptophan biosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01230 (Biosynthesis of amino acids) map01230 (Biosynthesis of amino acids) ko02024 (Quorum sensing) map02024 (Quorum sensing)

Module:

M00022 (Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate)

Reaction:

R01826 (Phosphoenolpyruvate + D-Erythrose 4-phosphate + H2O <=> 2-Dehydro-3-deoxy-D-arabino-heptonate 7-phosphate + Orthophosphate)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G33510.1	3-deoxy-d-arabino-heptulosonate 7-phosphate synthase. Enzyme catalyzing the first committed step in aromatic amino acid biosynthesis
RefSeq	XP_017242186.1	PREDICTED: phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic-like [Daucus carota subsp. sativus]
Swiss-Prot	P37822	Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum tuberosum OX=4113 GN=SHKB PE=2 SV=1
TrEMBL	A0A166BV61	Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011674 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	83.7369	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	64.719505	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	75.501083	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	70.481804	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	78.424431	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	74.648216	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	75.681343	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	83.457016	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	39.509823	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	34.097694	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	35.122311	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	36.771656	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	45.878437	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	40.974945	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	9.757979	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	13.464613	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	13.194239	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	43.61179	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	39.501858	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	37.661858	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	61.478119	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	18.406551	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	23.628941	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	22.854507	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	21.598116	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	36.776775	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	23.259327	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	48.736736	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	28.295116	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	158.392395		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	104.59568		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	111.167145		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	124.957573		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	75.419724		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	120.390633		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	120.538887		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	106.188675		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	109.337669		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	119.395157	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	114.828964	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	193.163803	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	62.157368	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	52.775349	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	92.278442	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	61.414749	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	70.388367	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	36.762932	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	52.777962	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	43.176216	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	42.612232	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg20085, jg22645, jg26342, jg31107
Aizoaceae	Mesembryanthemum crystallinum	2	gene_21814, gene_23335
Amaranthaceae	Atriplex hortensis	2	Ah009818, Ah023832
Amaranthaceae	Beta vulgaris	2	BVRB_1g008670, BVRB_9g215440
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg11250, Sbi_jg29355, Sbi_jg3582, Sbi_jg46220
Amaranthaceae	Salicornia europaea	3	Seu_jg20551, Seu_jg20554, Seu_jg6372
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00000841, GOSA_00005414
Amaranthaceae	Suaeda glauca	5	Sgl11809, Sgl11970, Sgl17299, Sgl56311, Sgl61819
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000013634, gene:ENSEOMG00000018766 ... gene:ENSEOMG00000033162, gene:ENSEOMG00000038396, gene:ENSEOMG00000049603, gene:ENSEOMG00000052125
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0011520, CQ.Regalona.r1.1BG0014440 ... CQ.Regalona.r1.7BG0004180, CQ.Regalona.r1.9AG0020470
Anacardiaceae	Pistacia vera	3	pistato.v30041210, pistato.v30101690, pistato.v30203280
Apiaceae	Apium graveolens	3	Ag2G00587, Ag3G01011, Ag3G01685
Arecaceae	Cocos nucifera	5	COCNU_02G007240, COCNU_05G005580, COCNU_13G003270 ... contig69148513G000010, scaffold001962G000050
Arecaceae	Phoenix dactylifera	7	gene-LOC103697540, gene-LOC103701771, gene-LOC103707951 ... gene-LOC103710778, gene-LOC103717958, gene-LOC120104018, gene-LOC120105219
Asparagaceae	Asparagus officinalis	3	AsparagusV1_03.1847.V1.1, AsparagusV1_03.288.V1.1 ... AsparagusV1_07.2738.V1.1
Asteraceae	Flaveria trinervia	5	Ftri10G07796, Ftri16G23259, Ftri2G05729, Ftri8G19921 ... Ftri9G17569
Brassicaceae	Arabidopsis thaliana	3	AT1G22410.1, AT4G33510.1, AT4G39980.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10007380m.g.v1.0, Thhalv10024923m.g.v1.0 ... Thhalv10024959m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g19890.v2.2, Sp7g31250.v2.2, Sp7g35890.v2.2
Brassicaceae	Brassica nigra	5	BniB03g019840.2N, BniB03g057640.2N, BniB04g037510.2N ... BniB05g000100.2N, BniB05g004570.2N
Casuarinaceae	Casuarina equisetifolia	8	Ceq01G0539, Ceq03G1318, Ceq06G1954, Ceq08G1206, Ceq08G1215 ... Ceq08G1216, Ceq09G0634, Ceq09G0642
Casuarinaceae	Casuarina glauca	6	Cgl01G0628, Cgl03G1420, Cgl06G2047, Cgl06G2062, Cgl09G0679 ... Cgl09G0691
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g02590, gene.Cymno09g04480
Dunaliellaceae	Dunaliella salina	1	Dusal.0249s00002.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g24320, gene.Thate03g06120, gene.Thate05g27460
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-2094
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG02.2496, evm.TU.LG06.1082, evm.TU.LG08.1252
Plantaginaceae	Plantago ovata	4	Pov_00002117, Pov_00020984, Pov_00037229, Pov_00039775
Plumbaginaceae	Limonium bicolor	5	Lb1G05897, Lb1G05898, Lb1G05916, Lb2G15382, Lb3G18169
Poaceae	Echinochloa crus-galli	11	AH01.2865, AH01.3425, AH03.3743, AH08.1869, BH01.3211 ... BH01.3779, BH03.4020, CH01.3442, CH01.4029, CH03.4291, CH08.2142
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_2AG0117050, gene-QOZ80_2BG0170730 ... gene-QOZ80_3AG0250750, gene-QOZ80_3BG0277450, gene-QOZ80_7AG0577730, gene-QOZ80_7BG0609060, gene-QOZ80_8AG0635000
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0057520.1, HORVU.MOREX.r3.2HG0123880.1
Poaceae	Lolium multiflorum	5	gene-QYE76_031027, gene-QYE76_031035, gene-QYE76_037262 ... gene-QYE76_039504, gene-QYE76_067520
Poaceae	Oryza coarctata	8	Oco05G015030, Oco06G015460, Oco13G013030, Oco14G013740 ... Oco15G012300, Oco16G010290, Oco19G010450, Oco20G010260
Poaceae	Oryza sativa	4	LOC_Os03g27230.1, LOC_Os07g42960.1, LOC_Os08g37790.1 ... LOC_Os10g41480.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G282500, gene-BS78_01G332500 ... gene-BS78_02G354700, gene-BS78_07G170600
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0403297
Poaceae	Sporobolus alterniflorus	12	Chr01G025080, Chr04G012710, Chr07G012110, Chr16G016190 ... Chr17G015530, Chr19G001990, Chr19G002000, Chr24G015000, Chr27G015230, Chr27G016910, Chr28G011980, Chr29G003460
Poaceae	Thinopyrum elongatum	3	Tel1E01G367700, Tel2E01G323100, Telscf30201G000100
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG032620, gene_TRIDC1BG038000 ... gene_TRIDC2AG020680, gene_TRIDC2BG024570
Poaceae	Triticum aestivum	6	TraesCS1B02G229700.1, TraesCS1D02G218300.1 ... TraesCS2A02G163600.1, TraesCS2B02G189300.1, TraesCS2D02G170400.1, TraesCS7A02G412900.1
Poaceae	Zea mays	6	Zm00001eb018960_P001, Zm00001eb040990_P002 ... Zm00001eb109620_P001, Zm00001eb199100_P001, Zm00001eb218070_P001, Zm00001eb327800_P001
Poaceae	Zoysia japonica	4	nbis-gene-17281, nbis-gene-32982, nbis-gene-338 ... nbis-gene-52195
Poaceae	Zoysia macrostachya	4	Zma_g24270, Zma_g3512, Zma_g5579, Zma_g6880
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.1944, evm.TU.LG04.1813, evm.TU.LG06.557 ... evm.TU.LG09.14
Posidoniaceae	Posidonia oceanica	3	gene.Posoc02g18570, gene.Posoc02g29610, gene.Posoc04g16070
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_14_RagTag.434, evm.TU.Scaffold_7_RagTag.979 ... evm.TU.Scaffold_8_RagTag.760
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-17495, nbisL1-mrna-17922, nbisL1-mrna-18985
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-10874, nbisL1-mrna-18028, nbisL1-mrna-3849
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-20488, nbisL1-mrna-6809, nbisL1-mrna-8301
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000002l.745, evm.TU.utg000007l.115 ... evm.TU.utg000018l.512
Rhizophoraceae	Kandelia obovata	1	Maker00003704
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-13683, nbisL1-mrna-13684, nbisL1-mrna-16190 ... nbisL1-mrna-2994, nbisL1-mrna-8225
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-10664, nbisL1-mrna-20306, nbisL1-mrna-9967
Salicaceae	Populus euphratica	6	populus_peu03076, populus_peu13750, populus_peu14588 ... populus_peu22907, populus_peu32244, populus_peu37139
Solanaceae	Lycium barbarum	3	gene-LOC132598806, gene-LOC132625731, gene-LOC132627551
Solanaceae	Solanum chilense	3	SOLCI000122500, SOLCI003723600, SOLCI006159500
Solanaceae	Solanum pennellii	3	gene-LOC107004500, gene-LOC107008091, gene-LOC107017083
Tamaricaceae	Reaumuria soongarica	4	STRG.12929_chr02_-, STRG.16578_chr06_-, STRG.9052_chr03_- ... gene_1282
Tamaricaceae	Tamarix chinensis	4	TC03G1603, TC09G0046, TC10G0032, TC11G0800
Zosteraceae	Zostera marina	3	Zosma01g03130.v3.1, Zosma01g09120.v3.1, Zosma06g16950.v3.1