halophFGD

Basic Information

Locus ID: Ag3G00966

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Poly(A) polymerase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	39413560	39424180	-	Ag3G00966

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.78	82,494.20 Da	49.53	75.82	-0.45

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd05402	NT_PAP_TUTase	55	210	1.6981E-28	-
Pfam	PF01909	Nucleotidyltransferase domain	84	165	2.1E-11	IPR002934
Pfam	PF04926	Poly(A) polymerase predicted RNA binding domain	363	421	2.6E-11	IPR007010
Pfam	PF04926	Poly(A) polymerase predicted RNA binding domain	422	493	4.0E-6	IPR007010
Pfam	PF04928	Poly(A) polymerase central domain	16	360	3.5E-109	IPR007012
SUPERFAMILY	SSF81301	Nucleotidyltransferase	16	209	2.99E-49	IPR043519
SUPERFAMILY	SSF81631	PAP/OAS1 substrate-binding domain	211	360	3.92E-62	-
SUPERFAMILY	SSF55003	PAP/Archaeal CCA-adding enzyme, C-terminal domain	361	487	1.12E-36	IPR011068
Gene3D	G3DSA:3.30.460.10	Beta Polymerase, domain 2	48	204	6.4E-158	IPR043519
Gene3D	G3DSA:3.30.70.590	Poly(A) polymerase predicted RNA binding domain	362	477	5.3E-29	-
Gene3D	G3DSA:1.10.1410.10	-	16	358	6.4E-158	-

Gene Ontology

Biological Process:

GO:0031123 (RNA 3'-end processing)

Molecular Function:

GO:0003723 (RNA binding) GO:0016779 (nucleotidyltransferase activity) GO:1990817 (poly(A) RNA polymerase activity)

KEGG Pathway

KO Term:

K14376 (poly(A) polymerase [EC:2.7.7.19])

Pathway:

ko03015 (mRNA surveillance pathway) map03015 (mRNA surveillance pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G17980.1	poly(A) polymerase 1. Encodes a poly(A) polymerase. Located in the nucleus.
RefSeq	XP_017247629.1	PREDICTED: nuclear poly(A) polymerase 1 isoform X2 [Daucus carota subsp. sativus]
Swiss-Prot	Q9LMT2	Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=PAPS1 PE=1 SV=1
TrEMBL	A0A165WLE8	polynucleotide adenylyltransferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015155 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	32.180973	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	24.548206	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	25.867102	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	26.343222	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	25.63026	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	32.840958	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	28.301121	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	30.416666	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	32.856457	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	31.977537	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	36.019554	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	39.99419	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	37.057602	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	30.841585	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	11.521038	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	14.037993	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	13.419819	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	18.001989	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	19.133785	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	19.747829	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	23.224728	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	22.78747	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	20.923594	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	22.147171	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	23.078175	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	21.948893	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	16.813833	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	28.353176	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	18.107483	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	18.419554		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	21.146212		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	15.753173		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	16.044573		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	15.909328		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	16.097082		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	8.091065		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	5.556246		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	7.154007		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	14.044072	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	8.682733	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	7.234439	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	21.862429	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	23.880821	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	43.900558	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	32.403469	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	20.184134	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	29.985109	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	21.076645	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	24.255962	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	25.28896	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	7	jg18103, jg25283, jg25284, jg28122, jg469, jg5222, jg7289
Aizoaceae	Mesembryanthemum crystallinum	5	gene_13210, gene_14141, gene_15885, gene_18528, gene_26095
Amaranthaceae	Atriplex hortensis	6	Ah011036, Ah014051, Ah019288, Ah021154, Ah022207, Ah035065
Amaranthaceae	Beta vulgaris	4	BVRB_2g032820, BVRB_3g054560, BVRB_3g056860, BVRB_3g063260
Amaranthaceae	Salicornia bigelovii	9	Sbi_jg11293, Sbi_jg15275, Sbi_jg20911, Sbi_jg22873 ... Sbi_jg46258, Sbi_jg56085, Sbi_jg58896, Sbi_jg63713, Sbi_jg63714
Amaranthaceae	Salicornia europaea	5	Seu_jg16736, Seu_jg20590, Seu_jg23180, Seu_jg25358 ... Seu_jg26573
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00005379, GOSA_00006266, GOSA_00012970, GOSA_00018165
Amaranthaceae	Suaeda glauca	12	Sgl01647, Sgl01668, Sgl02301, Sgl06821, Sgl07453, Sgl56272 ... Sgl61781, Sgl62290, Sgl66837, Sgl71108, Sgl74681, Sgl74687
Amaranthaceae	Chenopodium album	13	gene:ENSEOMG00000003897, gene:ENSEOMG00000014834 ... gene:ENSEOMG00000015256, gene:ENSEOMG00000019205, gene:ENSEOMG00000022646, gene:ENSEOMG00000024898, gene:ENSEOMG00000031681, gene:ENSEOMG00000037384, gene:ENSEOMG00000044604, gene:ENSEOMG00000045218, gene:ENSEOMG00000049574, gene:ENSEOMG00000049896, gene:ENSEOMG00000052335
Amaranthaceae	Chenopodium quinoa	11	CQ.Regalona.r1.2AG0015010, CQ.Regalona.r1.2BG0017110 ... CQ.Regalona.r1.3AG0023250, CQ.Regalona.r1.3BG0000130, CQ.Regalona.r1.3BG0023980, CQ.Regalona.r1.4BG0012610, CQ.Regalona.r1.6AG0001750, CQ.Regalona.r1.6BG0001840, CQ.Regalona.r1.6BG0011950, CQ.Regalona.r1.9AG0012120, CQ.Regalona.r1.9BG0010300
Anacardiaceae	Pistacia vera	5	pistato.v30123110, pistato.v30147090, pistato.v30147100 ... pistato.v30232830, pistato.v30254140
Apiaceae	Apium graveolens	4	Ag3G00966, Ag5G00877, Ag6G01436, Ag9G00520
Arecaceae	Cocos nucifera	6	COCNU_02G001080, COCNU_03G009580, COCNU_03G014690 ... COCNU_04G011360, COCNU_16G004790, scaffold005650G000020
Arecaceae	Phoenix dactylifera	5	gene-LOC103696079, gene-LOC103696098, gene-LOC103709667 ... gene-LOC103710229, gene-LOC103713411
Asparagaceae	Asparagus officinalis	6	AsparagusV1_01.2835.V1.1, AsparagusV1_05.1718.V1.1 ... AsparagusV1_05.202.V1.1, AsparagusV1_05.2677.V1.1, AsparagusV1_08.2370.V1.1, AsparagusV1_08.2959.V1.1
Asteraceae	Flaveria trinervia	7	Ftri10G11922, Ftri16G06532, Ftri18G07415, Ftri1G05527 ... Ftri2G02531, Ftri4G17254, Ftri7G27255
Brassicaceae	Arabidopsis thaliana	5	AT1G17980.1, AT2G25850.2, AT3G06560.1, AT4G32850.8 ... AT5G02670.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10001908m.g.v1.0, Thhalv10006945m.g.v1.0 ... Thhalv10024486m.g.v1.0
Brassicaceae	Schrenkiella parvula	6	Sp1g16040.v2.2, Sp2g12720.v2.2, Sp2g21980.v2.2 ... Sp3g05500.v2.2, Sp4g05670.v2.2, Sp7g30620.v2.2
Brassicaceae	Brassica nigra	6	BniB01g017610.2N, BniB01g057100.2N, BniB02g064620.2N ... BniB03g007400.2N, BniB03g027850.2N, BniB05g005180.2N
Casuarinaceae	Casuarina equisetifolia	11	Ceq02G1251, Ceq02G1252, Ceq03G2454, Ceq04G0854, Ceq04G0855 ... Ceq04G1101, Ceq04G1102, Ceq04G2062, Ceq05G0356, Ceq09G1005, Ceq09G1013
Casuarinaceae	Casuarina glauca	16	Cgl02G1292, Cgl03G2598, Cgl04G0960, Cgl04G0966, Cgl04G0967 ... Cgl04G0970, Cgl04G0972, Cgl04G1247, Cgl04G1257, Cgl04G1262, Cgl04G1269, Cgl04G1878, Cgl04G2256, Cgl05G0372, Cgl09G1103, Cgl09G1105
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno07g05390, gene.Cymno11g02300
Dunaliellaceae	Dunaliella salina	1	Dusal.1100s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g34380, gene.Thate03g00080, gene.Thate07g16850
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG01.269, evm.TU.LG07.841, evm.TU.LG10.288 ... evm.TU.LG11.1164
Plantaginaceae	Plantago ovata	7	Pov_00013927, Pov_00013928, Pov_00022565, Pov_00025752 ... Pov_00033602, Pov_00036582, Pov_00040323
Plumbaginaceae	Limonium bicolor	2	Lb3G19368, Lb4G26322
Poaceae	Echinochloa crus-galli	24	AH01.3846, AH03.3936, AH03.4111, AH06.2013, AH07.657 ... AH07.913, AH09.2101, BH01.4188, BH01.4189, BH03.4226, BH03.4446, BH06.1843, BH07.1034, BH07.3197, BH07.778, BH09.2266, CH01.1569, CH01.4476, CH06.2041, CH07.268, CH07.67, CH07.799, CH08.1147, CH09.2411
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_2AG0106870, gene-QOZ80_2BG0160460 ... gene-QOZ80_3AG0238270, gene-QOZ80_3BG0282200, gene-QOZ80_3BG0289790, gene-QOZ80_5AG0378260, gene-QOZ80_5BG0425350, gene-QOZ80_6AG0542850, gene-QOZ80_6BG0496070, gene-QOZ80_7BG0613390
Poaceae	Hordeum vulgare	9	HORVU.MOREX.r3.2HG0110140.1, HORVU.MOREX.r3.4HG0340660.1 ... HORVU.MOREX.r3.2HG0172810.1.CDS1, HORVU.MOREX.r3.2HG0196750.1.CDS1, HORVU.MOREX.r3.2HG0196810.1.CDS1, HORVU.MOREX.r3.4HG0343100.1.CDS1, HORVU.MOREX.r3.4HG0381380.1, HORVU.MOREX.r3.6HG0581010.1, HORVU.MOREX.r3.7HG0717970.1
Poaceae	Lolium multiflorum	7	gene-QYE76_014011, gene-QYE76_021773, gene-QYE76_034453 ... gene-QYE76_045837, gene-QYE76_050331, gene-QYE76_059189, gene-QYE76_062106
Poaceae	Oryza coarctata	10	Oco03G006060, Oco06G014570, Oco07G014390, Oco08G013860 ... Oco11G008240, Oco11G011140, Oco12G008270, Oco12G011250, Oco13G016400, Oco14G017220
Poaceae	Oryza sativa	7	LOC_Os01g50730.1, LOC_Os02g13400.2, LOC_Os03g19920.1 ... LOC_Os04g49870.1, LOC_Os06g21470.1, LOC_Os06g36360.2, LOC_Os07g48890.1
Poaceae	Paspalum vaginatum	6	gene-BS78_01G134900, gene-BS78_01G374200 ... gene-BS78_02G394900, gene-BS78_04G094000, gene-BS78_06G207200, gene-BS78_10G165600
Poaceae	Puccinellia tenuiflora	10	Pt_Chr0102598, Pt_Chr0107068, Pt_Chr0107533, Pt_Chr0206344 ... Pt_Chr0301572, Pt_Chr0305374, Pt_Chr0306571, Pt_Chr0400442, Pt_Chr0400453, Pt_Chr0603516
Poaceae	Sporobolus alterniflorus	15	Chr01G022420, Chr01G033150, Chr02G028950, Chr05G006610 ... Chr06G032430, Chr0G009930, Chr10G016410, Chr11G006030, Chr12G006430, Chr15G023830, Chr23G017310, Chr24G012050, Chr26G002540, Chr26G014220, Chr28G013470
Poaceae	Thinopyrum elongatum	12	Tel2E01G162800, Tel2E01G209300, Tel2E01G314500 ... Tel2E01G563800, Tel2E01G564000, Tel2E01G767300, Tel4E01G110800, Tel4E01G325200, Tel5E01G176000, Tel5E01G176100, Tel6E01G385700, Tel7E01G625500
Poaceae	Triticum dicoccoides	18	gene_TRIDC1BG066940, gene_TRIDC2AG008160 ... gene_TRIDC2AG011180, gene_TRIDC2AG047070, gene_TRIDC2AG064480, gene_TRIDC2BG013720, gene_TRIDC2BG049620, gene_TRIDC2BG068780, gene_TRIDC2BG068810, gene_TRIDC4AG016700, gene_TRIDC4AG038820, gene_TRIDC4BG010480, gene_TRIDC4BG034140, gene_TRIDC5AG013730, gene_TRIDC6AG028610, gene_TRIDC6BG035050, gene_TRIDC7AG049910, gene_TRIDC7BG043880
Poaceae	Triticum aestivum	27	TraesCS2A02G073200.1, TraesCS2A02G096500.1 ... TraesCS2A02G342300.1.cds1, TraesCS2A02G451700.1.cds1, TraesCS2A02G451800.1.cds1, TraesCS2B02G112000.1, TraesCS2B02G340000.1.cds1, TraesCS2B02G473300.1.cds1, TraesCS2B02G473400.1.cds1, TraesCS2D02G095000.1, TraesCS2D02G319900.1.cds1, TraesCS2D02G320700.1.cds1, TraesCS2D02G451500.1.cds1, TraesCS3D02G006700.1, TraesCS4A02G123900.1, TraesCS4A02G246800.1, TraesCS4B02G068100.1, TraesCS4B02G180500.1, TraesCS4D02G067100.1, TraesCS4D02G182000.1, TraesCS6A02G191200.1, TraesCS6B02G219800.3, TraesCS6D02G174400.1, TraesCS7A02G357100.1, TraesCS7B02G270600.4, TraesCS7D02G365600.4, TraesCSU02G155200.1.cds1
Poaceae	Zea mays	19	Zm00001eb015030_P004, Zm00001eb034770_P001 ... Zm00001eb052460_P002, Zm00001eb072530_P001, Zm00001eb104080_P001, Zm00001eb126480_P001, Zm00001eb161150_P001, Zm00001eb161240_P001, Zm00001eb176100_P001, Zm00001eb205010_P001, Zm00001eb217900_P001, Zm00001eb237990_P001, Zm00001eb277450_P002, Zm00001eb291230_P001, Zm00001eb293140_P002, Zm00001eb331120_P001, Zm00001eb355230_P001, Zm00001eb384370_P005, Zm00001eb395840_P001
Poaceae	Zoysia japonica	7	nbis-gene-10223, nbis-gene-1811, nbis-gene-34275 ... nbis-gene-41196, nbis-gene-42112, nbis-gene-53, nbis-gene-55090
Poaceae	Zoysia macrostachya	6	Zma_g1347, Zma_g15445, Zma_g28066, Zma_g30698, Zma_g32942 ... Zma_g7104
Portulacaceae	Portulaca oleracea	13	evm.TU.LG01.2271, evm.TU.LG05.1362, evm.TU.LG07.1510 ... evm.TU.LG07.1640, evm.TU.LG07.726, evm.TU.LG11.1297, evm.TU.LG13.760, evm.TU.LG13.761, evm.TU.LG14.1444, evm.TU.LG15.1600, evm.TU.LG15.211, evm.TU.LG21.440, evm.TU.LG21.441
Posidoniaceae	Posidonia oceanica	6	gene.Posoc03g21910, gene.Posoc03g21920, gene.Posoc03g21930 ... gene.Posoc04g04190, gene.Posoc06g21880, gene.Posoc08g12520
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_10_RagTag.1310 ... evm.TU.Scaffold_11_RagTag.705, evm.TU.Scaffold_18_RagTag.601, evm.TU.Scaffold_18_RagTag.602
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-13740, nbisL1-mrna-13743, nbisL1-mrna-14316 ... nbisL1-mrna-7043
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-4313, nbisL1-mrna-8048
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-12315, nbisL1-mrna-8803
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000004l.97, evm.TU.utg000005l.11 ... evm.TU.utg000023l.105
Rhizophoraceae	Kandelia obovata	4	Maker00001280, Maker00004213, Maker00008647, Maker00018994
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-16421, nbisL1-mrna-7387, nbisL1-mrna-959
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-17960, nbisL1-mrna-21352, nbisL1-mrna-8375
Salicaceae	Populus euphratica	5	populus_peu04985, populus_peu06865, populus_peu12718 ... populus_peu28459, populus_peu28460
Solanaceae	Lycium barbarum	6	gene-LOC132602677, gene-LOC132604219, gene-LOC132626743 ... gene-LOC132635844, gene-LOC132641679, gene-LOC132645829
Solanaceae	Solanum chilense	4	SOLCI001025900, SOLCI001548900, SOLCI002706700 ... SOLCI005823800
Solanaceae	Solanum pennellii	6	gene-LOC107005807, gene-LOC107007104, gene-LOC107007813 ... gene-LOC107020467, gene-LOC107023221, gene-LOC107027905
Tamaricaceae	Reaumuria soongarica	3	gene_10058, gene_12468, gene_3126
Tamaricaceae	Tamarix chinensis	3	TC01G2577, TC08G1902, TC12G1845
Zosteraceae	Zostera marina	2	Zosma03g03770.v3.1, Zosma03g24430.v3.1