Basic Information
Locus ID:
Ag3G00953
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Serine threonine-protein kinase At1g18390
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 38347488 | 38347859 | + | Ag3G00953 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.18 | 13,808.30 Da | 48.65 | 77.64 | -0.13 |
Protein Domain:
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017247407.1 | PREDICTED: LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isoform X9 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A165WLH9 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015152 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.20429 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.125541 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.455199 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.109476 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.184855 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.319785 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.081498 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.237824 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.093461 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.502868 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.249351 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.444797 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.176656 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.28387 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.001393 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.453679 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.081299 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.929252 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.029428 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.102193 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.053941 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30233140 |
| Apiaceae | Apium graveolens | 2 | Ag3G00953, Ag3G00960 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G009210, scaffold003228G000020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC113463076, gene-LOC120110545 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G08023 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g00980 |
| Poaceae | Echinochloa crus-galli | 15 | AH02.1557, AH02.2812, AH02.2813, AH02.2814, AH02.2818 ... |
| Poaceae | Eleusine coracana subsp. coracana | 7 | gene-QOZ80_1AG0029180, gene-QOZ80_1AG0029190 ... |
| Poaceae | Hordeum vulgare | 7 | HORVU.MOREX.r3.3HG0225430.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_003721, gene-QYE76_054651, gene-QYE76_054652 ... |
| Poaceae | Oryza coarctata | 4 | Oco01G017760, Oco01G017770, Oco01G017790, Oco10G015840 |
| Poaceae | Oryza sativa | 3 | LOC_Os01g04440.1, LOC_Os01g49560.1, LOC_Os01g49600.1 |
| Poaceae | Paspalum vaginatum | 10 | gene-BS78_03G072700, gene-BS78_03G233200 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0602421 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G012220, Chr02G023950, Chr03G003840, Chr03G013910 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G086500, Tel3E01G436000 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC2AG071890, gene_TRIDC2AG071920 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS2B02G539800.1, TraesCS2D02G512845.1 ... |
| Poaceae | Zoysia japonica | 7 | nbis-gene-12975, nbis-gene-24946, nbis-gene-26165 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g10920, Zma_g10921, Zma_g7575 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g02900 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_18_RagTag.528, evm.TU.Scaffold_3_RagTag.652 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-1321, nbisL1-mrna-28615 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4972 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000019l.347 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-18838, nbisL1-mrna-22570, nbisL1-mrna-22576 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19237 |
| Salicaceae | Populus euphratica | 2 | populus_peu20810, populus_peu20825 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132601598 |
| Solanaceae | Solanum chilense | 2 | SOLCI003031700, SOLCI005596100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107006244 |