halophFGD

Basic Information

Locus ID: Ag3G00952

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: receptor-like protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	38343357	38345423	-	Ag3G00952

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.19	22,822.18 Da	33.50	81.41	-0.13

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	6	92	9.0E-12	IPR001245
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	3	90	2.28E-18	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	1	59	1.2E-21	-
SMART	SM00219	tyrkin_6	1	137	0.0016	IPR020635

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0004713 (protein tyrosine kinase activity)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G16030.3	-
RefSeq	XP_017248403.1	PREDICTED: cysteine-rich receptor-like protein kinase 4 isoform X2 [Daucus carota subsp. sativus]
Swiss-Prot	Q9LPZ3	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 OS=Arabidopsis thaliana OX=3702 GN=At1g11410 PE=3 SV=3
TrEMBL	A0A166BBG7	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011358 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.905392	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	12.310698	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	11.578067	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	14.743208	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	8.436399	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	10.147794	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	5.730361	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	14.757183	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	8.708139	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	4.353106	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	9.197463	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	9.624928	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	30.445398	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	15.030447	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1.490552	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	2.017608	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	2.119409	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	2.283859	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	2.713639	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	1.237152	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	1.544876	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	1.019762	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.051673		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.821504		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.374604		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	3.371007		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	2.501172		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	6.255486		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	1.423607		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.642099		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.880211		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	3.629753	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	7.774891	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	2.253525	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	41.087727	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	8.070705	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	1.531073	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	1.637955	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	20.113571	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.897385	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	2.513616	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	2.751147	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	1.398946	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Atriplex hortensis	4	Ah016821, Ah016850, Ah017477, Ah017721
Amaranthaceae	Salicornia bigelovii	1	Sbi_jg25976
Amaranthaceae	Suaeda glauca	4	Sgl44173, Sgl48947, Sgl51603, Sgl80022
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000025129, gene:ENSEOMG00000045775 ... gene:ENSEOMG00000047034
Anacardiaceae	Pistacia vera	1	pistato.v30198380
Apiaceae	Apium graveolens	2	Ag3G00952, Ag4G01608
Arecaceae	Cocos nucifera	3	COCNU_12G003960, COCNU_14G009620, scaffold045056G000040
Arecaceae	Phoenix dactylifera	2	gene-LOC120109135, gene-LOC120110660
Asteraceae	Flaveria trinervia	1	Ftri4G07110
Casuarinaceae	Casuarina equisetifolia	3	Ceq01G1193, Ceq01G2466, Ceq07G2277
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno13g00420
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate07g19070
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG12.602
Plantaginaceae	Plantago ovata	1	Pov_00026929
Poaceae	Echinochloa crus-galli	1	CH06.1976
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0202258, Pt_Chr0206446
Poaceae	Thinopyrum elongatum	1	Tel2E01G218400
Poaceae	Zea mays	1	Zm00001eb036600_P001
Poaceae	Zoysia japonica	3	nbis-gene-11727, nbis-gene-28893, nbis-gene-55902
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.53456.1
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-14255
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-15413
Salicaceae	Populus euphratica	1	populus_peu19682
Tamaricaceae	Tamarix chinensis	1	TC07G2269
Zosteraceae	Zostera marina	2	Zosma04g21350.v3.1, Zosma22g00070.v3.1