Basic Information
Locus ID:
Ag3G00939
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
negative regulation of type I interferon-mediated signaling pathway
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 37200266 | 37204390 | + | Ag3G00939 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.31 | 73,340.30 Da | 58.78 | 89.25 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08616 | Stabilization of polarity axis | 237 | 328 | 1.6E-7 | - |
| ProSiteProfiles | PS50211 | Tripartite DENN domain profile. | 27 | 525 | 31.115627 | IPR037516 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 626 | 641 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 626 | 650 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73930.1 | 0 | |
| RefSeq | XP_017248599.1 | PREDICTED: protein DENND6A [Daucus carota subsp. sativus] | 0 |
| Q8IWF6 | Protein DENND6A OS=Homo sapiens OX=9606 GN=DENND6A PE=1 SV=1 | 0 | |
| TrEMBL | A0A165WMK1 | UDENN domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015134 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 9.813303 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.871594 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.755428 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 6.764239 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.871405 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 7.604483 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.355425 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.891017 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 21.983198 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 21.738247 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 26.730715 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 22.385084 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 20.491287 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 16.149942 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 14.037912 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 13.783051 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.930038 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 15.253342 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 13.596055 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 12.381289 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 12.163054 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 14.597862 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 19.167641 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 13.049294 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 16.79427 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 17.870529 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 16.727242 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 13.209772 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 13.033924 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.157892 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.007957 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.777073 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 12.449453 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.323109 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 11.026966 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.906005 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.015976 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.995512 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 15.880889 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 10.041806 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.745984 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 9.262746 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 9.887218 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 13.479265 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 12.753093 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 9.074272 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 15.828258 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 14.88738 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 12.772462 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 10.88776 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg18513, jg18514 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19747 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001463 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30894, Sbi_jg58384 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28262 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004841 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54927, Sgl60184 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000006446, gene:ENSEOMG00000021649 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0018390, CQ.Regalona.r1.5BG0019560 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30146100 |
| Apiaceae | Apium graveolens | 1 | Ag3G00939 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G005010, COCNU_03G010000 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103696133 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1758.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G27079 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G73930.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018286m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g29130.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g070890.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2394 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2531 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g01740 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0645s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g05400 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.422 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037262 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb0G36978, Lb0G37045, Lb2G11415, Lb6G30367 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4285, BH01.4588, CH01.4896 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0241750, gene-QOZ80_3BG0286320 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0390630.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_069204 |
| Poaceae | Oryza coarctata | 1 | Oco06G009010 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g15390.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G411400, gene-BS78_K107600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102125, Pt_Chr0102151 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr04G007060, Chr07G004570, Chr12G009470, Chr12G009520 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G381000 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4AG011780, gene_TRIDC4BG038650 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G086500.1, TraesCS4B02G217900.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb011310_P002, Zm00001eb078910_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-2186 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1596 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.2717, evm.TU.LG02.133, evm.TU.LG03.1180 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g31300 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.162 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14288 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10022 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14409 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000005l.281 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010104 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-309 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19064, nbisL1-mrna-20050 |
| Salicaceae | Populus euphratica | 2 | populus_peu28377, populus_peu29841 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633299 |
| Solanaceae | Solanum chilense | 1 | SOLCI006254600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014895 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15932 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G1364 |