Basic Information
Locus ID:
Ag3G00916
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 36145392 | 36168327 | - | Ag3G00916 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 36,679.61 Da | 47.91 | 94.86 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 57 | 317 | 7.4E-28 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 57 | 317 | 1.5E-39 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 50 | 326 | 1.2E-49 | - |
| SMART | SM00220 | serkin_6 | 46 | 322 | 5.9E-13 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 322 | 25.771242 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 164 | 176 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08160.1 | serine/threonine protein kinase 3. Encodes a serine/threonine protein kinase. | 0 |
| RefSeq | XP_017245894.1 | PREDICTED: serine/threonine-protein kinase 16-like [Daucus carota subsp. sativus] | 0 |
| P57760 | Serine/threonine-protein kinase 16 OS=Rattus norvegicus OX=10116 GN=Stk16 PE=2 SV=2 | 0 | |
| TrEMBL | A0A165WN47 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015111 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 21.220535 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 18.70842 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 19.174078 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 20.751347 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 19.557093 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 17.459829 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 16.368029 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 11.934057 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 29.081938 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 30.136831 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 28.707611 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 27.034998 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 28.925421 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 32.786591 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 36.111298 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 31.034134 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 33.68758 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 26.094763 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 23.114697 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 21.711624 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 21.56325 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 36.083149 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 33.501945 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 33.624958 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 32.691666 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 20.593245 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 23.271135 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 19.752922 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 24.105473 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 11.41781 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 10.986336 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 10.583552 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 22.207397 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 27.339443 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 21.498734 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 22.510183 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 12.041242 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 17.598686 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 17.227669 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 10.04044 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 8.557349 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 26.169779 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 32.112316 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 34.813396 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 39.879158 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 29.779066 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 34.191399 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 35.000622 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 36.61832 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 29.581278 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg13258, jg27354 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_13888, gene_2678 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g113740 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30932, Sbi_jg58340 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25943 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004808 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52685, Sgl57975 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006312, gene:ENSEOMG00000021529 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.5AG0018800, CQ.Regalona.r1.5BG0020040 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30145630 |
| Apiaceae | Apium graveolens | 4 | Ag3G00916, Ag3G00917, Ag3G02138, Ag8G01173 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G005940, COCNU_11G011590 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103702405, gene-LOC103712737, gene-LOC103717717 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.2271.V1.1, AsparagusV1_05.902.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G18552, Ftri2G04676 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G08160.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013995m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g34790.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g052980.2N, BniB05g027980.2N, BniB08g003610.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2489 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g03980, gene.Cymno04g07030 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate03g20710, gene.Thate03g25510, gene.Thate09g16800 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.467 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00033394, Pov_00033399 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G36905, Lb2G08683 |
| Poaceae | Echinochloa crus-galli | 6 | AH03.1290, AH03.1747, BH03.1438, BH03.1902, CH03.1584 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0533760, gene-QOZ80_6AG0533770 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0469190.1, HORVU.MOREX.r3.5HG0477210.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_004075, gene-QYE76_004798 |
| Poaceae | Oryza coarctata | 3 | Oco17G001220, Oco17G003610, Oco18G003630 |
| Poaceae | Oryza sativa | 2 | LOC_Os09g06230.1, LOC_Os09g20640.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G137300, gene-BS78_02G167700 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0702427, Pt_Chr0705045, Pt_Chr0705283 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr10G011150, Chr11G011120, Chr11G011280, Chr11G014960 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G282200, Tel5E01G329800 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG027430, gene_TRIDC5AG031840 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G166000.1, TraesCS5A02G188500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb095510_P003, Zm00001eb311400_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-19925, nbis-gene-30975 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30237, Zma_g32490 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.107, evm.TU.LG09.1342 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g16280, gene.Posoc03g08030 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.195 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14248 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5775 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14380 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000005l.259, evm.TU.utg000008l.524 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010253 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-332 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19032 |
| Salicaceae | Populus euphratica | 2 | populus_peu28407, populus_peu29798 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132600148, gene-LOC132603535, gene-LOC132632810 |
| Solanaceae | Solanum chilense | 2 | SOLCI000541800, SOLCI001096300 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107007708, gene-LOC107012236, gene-LOC107021253 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12691 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G0017, TC09G1316 |
| Zosteraceae | Zostera marina | 2 | Zosma03g04050.v3.1, Zosma03g28970.v3.1 |