Basic Information
Locus ID:
Ag3G00879
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
SGF29 tudor-like domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 33971225 | 33977413 | + | Ag3G00879 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 30,529.96 Da | 65.35 | 77.22 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07039 | SGF29 tudor-like domain | 132 | 265 | 2.1E-33 | IPR010750 |
| Gene3D | G3DSA:2.30.30.140 | - | 198 | 268 | 5.2E-20 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 134 | 197 | 6.1E-13 | - |
| ProSiteProfiles | PS51518 | SGF29 C-terminal domain profile. | 126 | 270 | 44.910259 | IPR010750 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 97 | 113 | - | - |
| Coils | Coil | Coil | 18 | 38 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G27460.1 | SGF29 tudor-like domain. | 0 |
| RefSeq | XP_017244110.1 | PREDICTED: uncharacterized protein LOC108215977 [Daucus carota subsp. sativus] | 0 |
| Q8RXY6 | SAGA-associated factor 29 homolog A OS=Arabidopsis thaliana OX=3702 GN=SGF29A PE=1 SV=1 | 0 | |
| TrEMBL | A0A165WQ84 | SGF29 C-terminal domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015064 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 5.757436 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.035716 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.243654 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 6.531333 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.560109 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.691088 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.799677 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.909744 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 13.120493 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 13.041974 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 13.992444 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 13.741877 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 11.602866 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 11.057068 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 9.893843 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 12.888005 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 12.02245 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 9.762775 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 12.198797 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.311842 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 9.633053 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 10.812504 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 10.808988 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 10.527068 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.460387 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 9.795022 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 10.223895 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.535452 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 10.129798 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.835524 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.989095 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.034995 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.717393 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.545754 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.518892 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.623334 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.03932 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.336288 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.859255 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.906467 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.750089 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 9.880651 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 14.328864 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 11.698311 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 15.004741 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 11.847834 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 12.451565 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 17.433084 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 17.081158 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 17.067585 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg17755, jg19867, jg40405 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17482 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah029859, Ah029863 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg35928, Sbi_jg647 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3998 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010482 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl64211, Sgl64217, Sgl68662, Sgl68665 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001975, gene:ENSEOMG00000007335 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.7AG0013990 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30023280 |
| Apiaceae | Apium graveolens | 2 | Ag11G03656, Ag3G00879 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717559 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1918.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G04944, Ftri1G29314 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G27460.1, AT5G40550.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004728m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g16670.v2.2 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1906 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1983 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno07g09890, gene.Cymno08g03530 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g00490 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6859, nbisL1-mrna-6863 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.259, evm.TU.LG05.265 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00008520, Pov_00024193, Pov_00027826 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb3G20776, Lb6G30750, Lb7G33298 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.3267, BH05.3301, CH05.3404 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0387830 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0450920.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_031755 |
| Poaceae | Oryza coarctata | 2 | Oco23G005150, Oco24G004740 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g19350.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G067800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403163 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G022260, Chr19G014460, Chr27G001140 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G206200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG019990, gene_TRIDC5BG020050 |
| Poaceae | Triticum aestivum | 4 | TraesCS5A02G119000.1, TraesCS5A02G119200.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb409000_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-12447 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25727 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.954, evm.TU.LG11.303 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc05g16290, gene.Posoc10g11190 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.107 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-14928, nbisL1-mrna-2425, nbisL1-mrna-2550 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-615 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-97 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.77 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007228 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11898 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17484 |
| Salicaceae | Populus euphratica | 1 | populus_peu01121 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132625188 |
| Solanaceae | Solanum chilense | 1 | SOLCI003283500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011514 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.25723_chr11_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1315 |
| Zosteraceae | Zostera marina | 1 | Zosma04g00960.v3.1 |