Basic Information
Locus ID:
Ag3G00865
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 32949855 | 32955353 | + | Ag3G00865 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 36,139.44 Da | 44.49 | 77.80 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 106 | 143 | 5.7E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 238 | 272 | 0.075 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 28 | 53 | 0.021 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 19 | 307 | 9.85E-47 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 6 | 315 | 1.6E-46 | IPR015943 |
| SMART | SM00320 | WD40_4 | 276 | 313 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 14 | 53 | 8.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 242 | 273 | 4.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 104 | 143 | 1.2E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 21 | 62 | 10.642123 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 111 | 145 | 14.451798 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 111 | 145 | 11.945589 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 253 | 282 | 10.775796 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 40 | 54 | 2.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 130 | 144 | 2.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 260 | 274 | 2.3E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14530.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_017244715.1 | PREDICTED: WD repeat-containing protein 82-B [Daucus carota subsp. sativus] | 0 |
| Q9LYK6 | Protein ANTHESIS POMOTING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=APRF1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A165WQH1 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015059 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 10.409132 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.998173 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.796345 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.228136 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.563726 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.172736 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.93224 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.370814 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 19.829004 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 16.759878 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 15.495453 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 20.554649 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 18.436661 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 16.323641 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 4.010614 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.610633 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 5.55064 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.816883 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.324765 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.612619 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 6.180054 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 9.17891 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 7.624484 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 8.673417 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 8.652271 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 5.192858 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 7.618279 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 6.333121 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 5.020064 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 6.245571 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.662578 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.045058 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 9.83163 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 13.009014 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 9.264114 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 6.958488 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 5.664633 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 7.017612 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 11.000372 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.420766 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.439443 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 7.337709 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.550265 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 6.669388 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 5.998979 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 8.992101 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 5.961977 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 19.153896 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 17.677065 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 16.092823 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17204 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_11361, gene_24102 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah007045, Ah026871 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g130730 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg13682, Sbi_jg52220, Sbi_jg533 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg4111, Seu_jg9624 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00017649, GOSA_00027662 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl21084, Sgl26439, Sgl33232, Sgl38620 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000000572, gene:ENSEOMG00000003847 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4BG0014020, CQ.Regalona.r1.6AG0020210 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30022920, pistato.v30095400 |
| Apiaceae | Apium graveolens | 2 | Ag3G00865, Ag5G00551 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G008650, COCNU_07G001530 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708156, gene-LOC103719890 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.2967.V1.1, AsparagusV1_10.303.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G19139, Ftri18G12982 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G14530.1, AT5G66240.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10004561m.g.v1.0, Thhalv10014091m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g30450.v2.2, Sp6g29480.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g000100.2N, BniB05g024030.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G1869, Ceq06G0191 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G1949, Cgl06G0208 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno03g04940, gene.Cymno11g00260 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0509s00001.v1.0, Dusal.0724s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g02200, gene.Thate08g07400 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6988 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG05.312, evm.TU.LG07.479, evm.TU.LG09.90 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00017869, Pov_00020427, Pov_00027853 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G03735, Lb1G03753, Lb4G22456, Lb4G22458 |
| Poaceae | Echinochloa crus-galli | 6 | AH04.1133, AH05.1561, BH04.1107, BH05.1711, CH04.1285 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0364650, gene-QOZ80_5BG0412600 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0079810.1, HORVU.MOREX.r3.4HG0341890.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_016240, gene-QYE76_063918 |
| Poaceae | Oryza coarctata | 4 | Oco04G024600, Oco10G015580, Oco13G011530, Oco14G012290 |
| Poaceae | Oryza sativa | 2 | LOC_Os05g46570.1, LOC_Os07g40030.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G362100, gene-BS78_09G220400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0503837, Pt_Chr0503854 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G014940, Chr16G011850 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G593600, Tel4E01G121300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG053710, gene_TRIDC1BG061510 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G365700.1, TraesCS1B02G383300.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb072520_P001, Zm00001eb294550_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-43356 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18710, Zma_g28712 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.354, evm.TU.LG08.1480, evm.TU.LG22.372 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g12300, gene.Posoc04g00720 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.110, evm.TU.Scaffold_6_RagTag.129 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14943, nbisL1-mrna-264 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14314, nbisL1-mrna-20739 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-112, nbisL1-mrna-5904 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.91, evm.TU.utg000019l.1146 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006788, Maker00007986 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11883, nbisL1-mrna-6554 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-17468, nbisL1-mrna-2416 |
| Salicaceae | Populus euphratica | 4 | populus_peu01073, populus_peu11897, populus_peu14138 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132616879, gene-LOC132621919 |
| Solanaceae | Solanum chilense | 2 | SOLCI001565300, SOLCI006301500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107005219, gene-LOC107009002 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.23263_chr05_+, gene_5676 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3582, TC02G2497 |
| Zosteraceae | Zostera marina | 2 | Zosma01g00820.v3.1, Zosma03g00660.v3.1 |