halophFGD

Basic Information

Locus ID: Ag3G00863

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the DEAD box helicase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	32767740	32775849	+	Ag3G00863

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.08	77,882.78 Da	55.78	65.38	-0.74

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00201	WW	19	48	4.17707E-4	IPR001202
CDD	cd18787	SF2_C_DEAD	389	518	5.4053E-62	-
Pfam	PF00270	DEAD/DEAH box helicase	194	364	1.3E-47	IPR011545
Pfam	PF00271	Helicase conserved C-terminal domain	401	509	9.0E-33	IPR001650
SUPERFAMILY	SSF51045	WW domain	11	50	7.36E-8	IPR036020
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	242	525	1.37E-72	IPR027417
Gene3D	G3DSA:3.40.50.300	-	380	551	3.5E-59	IPR027417
Gene3D	G3DSA:2.20.70.10	-	13	60	7.7E-6	-
Gene3D	G3DSA:3.40.50.300	-	144	379	9.1E-87	IPR027417
SMART	SM00490	helicmild6	429	509	1.9E-34	IPR001650
SMART	SM00487	ultradead3	189	392	4.7E-62	IPR014001
SMART	SM00456	ww_5	17	50	4.0E-6	IPR001202
ProSiteProfiles	PS51194	Superfamilies 1 and 2 helicase C-terminal domain profile.	404	548	25.387375	IPR001650
ProSiteProfiles	PS51195	DEAD-box RNA helicase Q motif profile.	170	198	11.032727	IPR014014
ProSiteProfiles	PS51192	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	201	375	30.069185	IPR014001
ProSiteProfiles	PS50020	WW/rsp5/WWP domain profile.	16	50	11.230801	IPR001202
ProSitePatterns	PS00039	DEAD-box subfamily ATP-dependent helicases signature.	321	329	-	IPR000629
ProSitePatterns	PS01159	WW/rsp5/WWP domain signature.	22	48	-	IPR001202
MobiDBLite	mobidb-lite	consensus disorder prediction	608	710	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	570	596	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	84	98	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	608	649	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	70	115	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	23	-	-

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0003724 (RNA helicase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K12823 (ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7])

Pathway:

ko03040 (Spliceosome) map03040 (Spliceosome)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G01540.1	DEAD box RNA helicase 1. RNA HELICASE DRH1
RefSeq	XP_017248267.1	PREDICTED: ATP-dependent RNA helicase-like protein DB10 [Daucus carota subsp. sativus]
Swiss-Prot	P46942	ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris OX=4096 PE=2 SV=1
TrEMBL	A0A165WQM5	DEAD-box ATP-dependent RNA helicase 14 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015055 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	21.370262	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	10.78872	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	11.25993	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	12.092739	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	12.929152	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	9.565078	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	10.317772	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	4.486415	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	25.742418	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	25.363684	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	28.119396	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	26.161549	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	23.521412	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	22.974737	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	11.138138	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	11.116624	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	10.477191	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	9.307353	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	9.233788	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	10.148097	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	10.757571	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	9.902515	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	12.932291	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	11.608313	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	15.507899	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	14.002145	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	9.448949	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	10.636868	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	14.523134	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	2.56091		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	4.206989		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	3.766954		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	4.604373		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	8.873264		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	5.863308		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	5.128213		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.50326		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	3.599476		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	16.429998	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	8.875862	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	3.575202	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	9.939939	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	9.876781	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	15.523306	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	12.221688	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	9.602006	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	16.830681	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	19.341339	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	15.065217	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	16.603577	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg17783, jg25242, jg28141, jg30472
Aizoaceae	Mesembryanthemum crystallinum	2	gene_15660, gene_9657
Amaranthaceae	Atriplex hortensis	2	Ah006988, Ah019962
Amaranthaceae	Beta vulgaris	1	BVRB_3g059690
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg19152, Sbi_jg37572, Sbi_jg38186, Sbi_jg6317
Amaranthaceae	Salicornia europaea	1	Seu_jg5415
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00003645, GOSA_00024097
Amaranthaceae	Suaeda glauca	4	Sgl01602, Sgl06767, Sgl25149, Sgl30306
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000008730, gene:ENSEOMG00000014449 ... gene:ENSEOMG00000027441, gene:ENSEOMG00000028728, gene:ENSEOMG00000029868, gene:ENSEOMG00000043082, gene:ENSEOMG00000044111
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.3AG0012760, CQ.Regalona.r1.3BG0012840 ... CQ.Regalona.r1.4AG0012060, CQ.Regalona.r1.4BG0014130, CQ.Regalona.r1.6BG0013600
Anacardiaceae	Pistacia vera	2	pistato.v30022650, pistato.v30232460
Apiaceae	Apium graveolens	4	Ag3G00863, Ag4G00762, Ag8G01814, Ag9G00469
Arecaceae	Cocos nucifera	5	COCNU_01G000190, COCNU_06G008480, COCNU_12G000320 ... COCNU_13G000250, COCNU_14G005640
Arecaceae	Phoenix dactylifera	8	gene-LOC103696445, gene-LOC103697068, gene-LOC103699024 ... gene-LOC103700537, gene-LOC103708171, gene-LOC103709291, gene-LOC120103868, gene-LOC120107480
Asparagaceae	Asparagus officinalis	2	AsparagusV1_05.2606.V1.1, AsparagusV1_Unassigned.981.V1.1
Asteraceae	Flaveria trinervia	4	Ftri14G00143, Ftri17G31092, Ftri18G01135, Ftri18G10066
Brassicaceae	Arabidopsis thaliana	3	AT3G01540.2, AT3G06480.1, AT5G14610.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10012853m.g.v1.0, Thhalv10019956m.g.v1.0 ... Thhalv10020294m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp3g00510.v2.2, Sp3g05420.v2.2, Sp6g29420.v2.2
Brassicaceae	Brassica nigra	4	BniB03g024570.2N, BniB05g023920.2N, BniB07g035150.2N ... BniB07g061920.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G1848, Ceq09G1405
Casuarinaceae	Casuarina glauca	2	Cgl02G1928, Cgl09G1497
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g14540, gene.Cymno05g06030
Dunaliellaceae	Dunaliella salina	3	Dusal.0159s00016.v1.0, Dusal.0313s00016.v1.0 ... Dusal.0466s00003.v1.0
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate01g16740, gene.Thate03g22960, gene.Thate07g15880 ... gene.Thate07g20340, gene.Thate08g09890
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-10321, nbisL1-mrna-10828, nbisL1-mrna-5121
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG05.347, evm.TU.LG11.1127
Plantaginaceae	Plantago ovata	2	Pov_00022541, Pov_00023282
Plumbaginaceae	Limonium bicolor	6	Lb0G38389, Lb1G01074, Lb3G21004, Lb4G23074, Lb4G23091 ... Lb6G31402
Poaceae	Echinochloa crus-galli	8	AH02.2020, AH02.491, BH02.2063, BH02.509, BH04.2247 ... CH02.2238, CH02.554, CH04.2668
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0011430, gene-QOZ80_1AG0020850 ... gene-QOZ80_1BG0060060, gene-QOZ80_1BG0070640, gene-QOZ80_9AG0692600, gene-QOZ80_9BG0718670
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.3HG0235240.1, HORVU.MOREX.r3.3HG0241770.1 ... HORVU.MOREX.r3.3HG0263860.2
Poaceae	Lolium multiflorum	4	gene-QYE76_049862, gene-QYE76_050047, gene-QYE76_050641 ... gene-QYE76_050642
Poaceae	Oryza coarctata	6	Oco01G002920, Oco01G012350, Oco02G002950, Oco02G012490 ... Oco21G009940, Oco22G011230
Poaceae	Paspalum vaginatum	3	gene-BS78_03G048300, gene-BS78_03G161600 ... gene-BS78_10G033300
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0200386, Pt_Chr0205346, Pt_Chr0205422, Pt_Chr0207382 ... Pt_Chr0602973
Poaceae	Sporobolus alterniflorus	11	Chr02G017740, Chr02G019670, Chr03G005120, Chr03G008880 ... Chr05G010680, Chr05G016270, Chr07G013810, Chr07G013820, Chr08G005570, Chr08G009630, Chr31G008570
Poaceae	Thinopyrum elongatum	4	Tel3E01G174600, Tel3E01G220000, Tel3E01G350700 ... Tel6E01G262700
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG012140, gene_TRIDC3AG016280 ... gene_TRIDC3AG027580, gene_TRIDC3BG016350, gene_TRIDC3BG021180, gene_TRIDC3BG034140
Poaceae	Triticum aestivum	9	TraesCS3A02G100200.1, TraesCS3A02G130200.4 ... TraesCS3A02G194200.1, TraesCS3B02G117000.1, TraesCS3B02G149300.8, TraesCS3B02G230800.1, TraesCS3D02G100900.1, TraesCS3D02G131100.11, TraesCS3D02G202500.3
Poaceae	Zea mays	6	Zm00001eb116020_P003, Zm00001eb122880_P005 ... Zm00001eb162370_P006, Zm00001eb164820_P006, Zm00001eb336740_P003, Zm00001eb356610_P001
Poaceae	Zoysia japonica	4	nbis-gene-13146, nbis-gene-13358, nbis-gene-21446 ... nbis-gene-47334
Poaceae	Zoysia macrostachya	4	Zma_g10458, Zma_g19150, Zma_g7691, Zma_g8056
Portulacaceae	Portulaca oleracea	5	evm.TU.LG08.1532, evm.TU.LG13.1077, evm.TU.LG16.1487 ... evm.TU.LG22.424, evm.TU.LG26.179
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g13160, gene.Posoc04g21230
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_3_RagTag.1912, evm.TU.Scaffold_3_RagTag.696 ... evm.TU.Scaffold_3_RagTag.697
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-1272, nbisL1-mrna-2387, nbisL1-mrna-2585
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-18471, nbisL1-mrna-6763
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-3081, nbisL1-mrna-6378
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000019l.70, evm.TU.utg000019l.795
Rhizophoraceae	Kandelia obovata	2	Maker00002328, Maker00012931
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-12042, nbisL1-mrna-5258
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-13130
Salicaceae	Populus euphratica	5	populus_peu01062, populus_peu20741, populus_peu24415 ... populus_peu24416, populus_peu25681
Solanaceae	Lycium barbarum	3	gene-LOC132616981, gene-LOC132621482, gene-LOC132626705
Solanaceae	Solanum chilense	3	SOLCI000100200, SOLCI000775400, SOLCI001041500
Solanaceae	Solanum pennellii	3	gene-LOC107004850, gene-LOC107007111, gene-LOC107011069
Tamaricaceae	Reaumuria soongarica	3	STRG.23246_chr05_+, gene_1240, gene_937
Tamaricaceae	Tamarix chinensis	3	TC01G3600, TC03G0968, TC12G1724
Zosteraceae	Zostera marina	2	Zosma01g32110.v3.1, Zosma01g37020.v3.1