Basic Information
Locus ID:
Ag3G00848
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Wall-associated receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 32063089 | 32065694 | - | Ag3G00848 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 67,259.56 Da | 36.68 | 86.31 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 303 | 561 | 1.9E-42 | IPR000719 |
| Pfam | PF19160 | SPARK | 44 | 183 | 9.7E-12 | IPR043891 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 281 | 565 | 2.29E-70 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 263 | 374 | 1.5E-26 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 375 | 579 | 2.1E-51 | - |
| SMART | SM00220 | serkin_6 | 301 | 569 | 2.0E-25 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 301 | 569 | 36.103195 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 418 | 430 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 576 | 601 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59110.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017239804.1 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g28960 [Daucus carota subsp. sativus] | 0 |
| Q8LKZ1 | Nodulation receptor kinase OS=Pisum sativum OX=3888 GN=NORK PE=1 SV=1 | 0 | |
| TrEMBL | A0A162A9S6 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015038 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.12088 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.15827 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.295967 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.103739 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.389581 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.387041 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.788911 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.4416 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.612401 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.153399 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.214339 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.367219 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.186773 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.198165 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.259909 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.107665 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.063325 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.12088 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.739875 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.938352 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.46295 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg34639, jg40355 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30022090, pistato.v30222550 |
| Apiaceae | Apium graveolens | 3 | Ag3G00848, Ag4G00791, Ag5G02204 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G009030 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710072 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.598.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G21864, Ftri9G17997 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1809 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G1885, Cgl07G0867 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1042 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00034419 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1283, BH09.1395, CH09.1503 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_4AG0314320, gene-QOZ80_4BG0340750 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0174060.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_044524 |
| Poaceae | Oryza coarctata | 1 | Oco08G007930 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g39180.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G126100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302411, Pt_Chr0305334 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G011200, Chr26G008330, Chr30G008500 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G575000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG048120, gene_TRIDC2BG050580 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G334300.1, TraesCS2B02G347500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb080360_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-7461 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21425 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_15_RagTag.735, evm.TU.Scaffold_6_RagTag.179 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14995, nbisL1-mrna-26913 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1642, nbisL1-mrna-653 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-144, nbisL1-mrna-15656 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000011l.38, evm.TU.utg000001l.396 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11267 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17773 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132639734 |
| Solanaceae | Solanum chilense | 2 | SOLCI003447300, SOLCI003618000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107019177 |