halophFGD

Basic Information

Locus ID: Ag3G00847

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: RING-H2 finger protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	32041396	32042665	+	Ag3G00847

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.80	42,126.12 Da	46.65	81.63	-0.31

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16454	RING-H2_PA-TM-RING	156	199	3.98127E-19	-
Pfam	PF13639	Ring finger domain	156	199	1.5E-12	IPR001841
SUPERFAMILY	SSF57850	RING/U-box	136	204	7.07E-20	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	132	203	7.1E-21	IPR013083
SMART	SM00184	ring_2	157	198	5.2E-7	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	157	199	12.415513	IPR001841

KEGG Pathway

KO Term:

K19041 (E3 ubiquitin-protein ligase RNF38/44 [EC:2.3.2.27])

Best hit

Source	Best Hit ID	Description
TAIR	AT5G40250.1	RING/U-box superfamily protein.
RefSeq	XP_017246140.1	PREDICTED: RING-H2 finger protein ATL46 [Daucus carota subsp. sativus]
Swiss-Prot	Q9FL07	RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1
TrEMBL	A0A162A8A8	RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015036 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.568648	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.891979	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	1.35452	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	1.384903	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	1.198602	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.431187	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.627667	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.36107	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	2.926723	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	3.028903	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	3.549879	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	1.786979	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	2.549629	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	1.662126	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	4.426823	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	5.225903	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	2.472906	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	1.82697	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	1.96162	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	2.251825	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.795719	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.914434	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.814156	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	1.087501	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	1.671825	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.1109	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.220983	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.204508	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.261117	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.15253		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.413049		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.188169		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.663774		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.854368		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.475944		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.377721		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.379958		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.267081		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.421422	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.13748	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.044936	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.91956	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.349591	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.260197	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.318095	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.505051	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.203356	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	5.396015	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	2.47754	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	2.42661	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg13051, jg19828, jg25816, jg30484, jg40349, jg7054
Aizoaceae	Mesembryanthemum crystallinum	2	gene_13680, gene_3661
Amaranthaceae	Atriplex hortensis	2	Ah000663, Ah013524
Amaranthaceae	Beta vulgaris	2	BVRB_5g116650, BVRB_6g149270
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg30495, Sbi_jg42274, Sbi_jg44857, Sbi_jg58753
Amaranthaceae	Salicornia europaea	2	Seu_jg27266, Seu_jg28628
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00002375, GOSA_00014975
Amaranthaceae	Suaeda glauca	4	Sgl35398, Sgl40773, Sgl55262, Sgl60526
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000008212, gene:ENSEOMG00000014043 ... gene:ENSEOMG00000023169, gene:ENSEOMG00000027331
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.5AG0022620, CQ.Regalona.r1.5BG0024010 ... CQ.Regalona.r1.6AG0005860, CQ.Regalona.r1.6BG0006140
Anacardiaceae	Pistacia vera	1	pistato.v30138900
Apiaceae	Apium graveolens	4	Ag1G01345, Ag3G00847, Ag6G00338, Ag9G00498
Arecaceae	Cocos nucifera	2	COCNU_01G009180, COCNU_11G008940
Arecaceae	Phoenix dactylifera	2	gene-LOC103700846, gene-LOC103710046
Asparagaceae	Asparagus officinalis	1	AsparagusV1_05.2323.V1.1
Asteraceae	Flaveria trinervia	8	Ftri17G16965, Ftri18G01112, Ftri18G25667, Ftri1G13101 ... Ftri2G13981, Ftri5G25282, Ftri8G00955, FtriNA30591
Brassicaceae	Arabidopsis thaliana	2	AT1G23980.1, AT5G40250.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10007961m.g.v1.0, Thhalv10028349m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g21260.v2.2, Sp7g01700.v2.2
Brassicaceae	Brassica nigra	4	BniB01g026730.2N, BniB03g019270.2N, BniB04g039190.2N ... BniB06g059820.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G1804, Ceq07G0830
Casuarinaceae	Casuarina glauca	2	Cgl02G1880, Cgl07G0885
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno01g03580
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate04g26390, gene.Thate09g11070
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-6830
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.1074, evm.TU.LG05.427, evm.TU.LG10.789
Plantaginaceae	Plantago ovata	3	Pov_00023341, Pov_00027884, Pov_00034428
Plumbaginaceae	Limonium bicolor	1	Lb4G26289
Poaceae	Echinochloa crus-galli	11	AH03.1768, AH06.380, AH06.931, AH07.3418, AH07.3440 ... BH03.1920, BH06.507, BH06.962, BH07.3271, CH06.502, CH07.3322
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0145360, gene-QOZ80_2BG0200810 ... gene-QOZ80_6AG0509940, gene-QOZ80_6AG0514960, gene-QOZ80_6BG0466680, gene-QOZ80_6BG0487000
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.5HG0477590.1.CDS1 ... HORVU.MOREX.r3.7HG0656100.1.CDS1, HORVU.MOREX.r3.7HG0667000.1.CDS1
Poaceae	Lolium multiflorum	2	gene-QYE76_004924, gene-QYE76_028399
Poaceae	Oryza coarctata	7	Oco03G021360, Oco04G021990, Oco11G003180, Oco11G006080 ... Oco12G003150, Oco12G006120, Oco17G003830
Poaceae	Oryza sativa	4	LOC_Os02g50930.1, LOC_Os06g07100.2, LOC_Os06g12680.1 ... LOC_Os09g20980.1
Poaceae	Paspalum vaginatum	4	gene-BS78_02G169700, gene-BS78_04G275500 ... gene-BS78_10G056500, gene-BS78_10G098900
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0702361, Pt_Chr0702444, Pt_Chr0705432
Poaceae	Sporobolus alterniflorus	12	Chr06G002480, Chr10G011000, Chr11G011430, Chr11G019290 ... Chr11G022060, Chr13G004560, Chr14G002430, Chr14G004550, Chr14G013170, Chr21G001530, Chr21G003950, Chr21G012300
Poaceae	Thinopyrum elongatum	3	Tel5E01G332500, Tel7E01G258500, Tel7E01G351000
Poaceae	Triticum dicoccoides	6	gene_TRIDC5AG032120, gene_TRIDC5BG033790 ... gene_TRIDC7AG015210, gene_TRIDC7AG023770, gene_TRIDC7BG004550, gene_TRIDC7BG014290
Poaceae	Triticum aestivum	9	TraesCS5A02G198500.1.cds1, TraesCS5B02G197200.1.cds1 ... TraesCS5D02G204500.1.cds1, TraesCS7A02G129900.1.cds1, TraesCS7A02G190800.1.cds1, TraesCS7B02G029900.1.cds1, TraesCS7B02G095700.1.cds1, TraesCS7D02G129000.1.cds1, TraesCS7D02G191800.1.cds1
Poaceae	Zea mays	6	Zm00001eb098900_P001, Zm00001eb254330_P001 ... Zm00001eb271600_P001, Zm00001eb279830_P001, Zm00001eb311550_P001, Zm00001eb372150_P001
Poaceae	Zoysia japonica	6	nbis-gene-19940, nbis-gene-30961, nbis-gene-34807 ... nbis-gene-35152, nbis-gene-51372, nbis-gene-8743
Poaceae	Zoysia macrostachya	6	Zma_g14407, Zma_g29408, Zma_g30246, Zma_g31418, Zma_g31645 ... Zma_g32477
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.2507, evm.TU.LG03.376, evm.TU.LG09.1062 ... evm.TU.LG12.1330, evm.TU.LG13.244, evm.TU.LG14.1652
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g07260
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_11_RagTag.993, evm.TU.Scaffold_17_RagTag.262 ... evm.TU.Scaffold_3_RagTag.1868, evm.TU.Scaffold_6_RagTag.185
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-14677, nbisL1-mrna-14999, nbisL1-mrna-23070 ... nbisL1-mrna-2310, nbisL1-mrna-2642
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-11666, nbisL1-mrna-657, nbisL1-mrna-7140
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-12561, nbisL1-mrna-14789, nbisL1-mrna-151 ... nbisL1-mrna-3041
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000010l.35, add.evm.TU.utg000011l.40 ... add.evm.TU.utg000013l.59, add.evm.TU.utg000019l.34
Rhizophoraceae	Kandelia obovata	4	Maker00001741, Maker00006379, Maker00008159, Maker00008889
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-17053, nbisL1-mrna-19564, nbisL1-mrna-21485 ... nbisL1-mrna-21548
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-15835, nbisL1-mrna-17423, nbisL1-mrna-8632
Salicaceae	Populus euphratica	6	populus_peu00997, populus_peu01014, populus_peu11899 ... populus_peu24421, populus_peu28609, populus_peu30070
Solanaceae	Lycium barbarum	4	gene-LOC132622992, gene-LOC132623104, gene-LOC132632724 ... gene-LOC132641380
Solanaceae	Solanum chilense	4	SOLCI000701800, SOLCI003578400, SOLCI005033400 ... SOLCI007240000
Solanaceae	Solanum pennellii	4	gene-LOC107009117, gene-LOC107009378, gene-LOC107013733 ... gene-LOC107019002
Tamaricaceae	Reaumuria soongarica	3	STRG.10003_chr06_+, gene_11227, gene_4807
Tamaricaceae	Tamarix chinensis	3	TC02G3224, TC08G2405, TC11G0946
Zosteraceae	Zostera marina	1	Zosma05g29860.v3.1