Basic Information
Locus ID:
Ag3G00815
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box protein At3g23950
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 29340336 | 29342057 | + | Ag3G00815 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.92 | 55,482.63 Da | 50.46 | 78.95 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 71 | 109 | 9.2E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 71 | 123 | 4.97E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 63 | 110 | 2.5E-7 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 68 | 117 | 11.405066 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49990.1 | F-box family protein. | 0 |
| RefSeq | XP_017243765.1 | PREDICTED: F-box protein At1g49990 [Daucus carota subsp. sativus] | 0 |
| Q9LPM2 | F-box protein At1g49990 OS=Arabidopsis thaliana OX=3702 GN=At1g49990 PE=2 SV=1 | 0 | |
| TrEMBL | A0A118K194 | F-box domain-containing protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_019193 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 20.877253 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 15.085793 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 18.35605 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 22.170343 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 17.95657 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 24.412565 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 19.294958 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 20.345467 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 35.694088 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 34.107586 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 32.511089 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 36.129856 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 33.765804 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 36.168461 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 28.73974 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 28.415297 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 29.051256 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 30.695766 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 23.245806 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 23.877527 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 25.998968 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 37.637005 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 32.055153 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 35.656788 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 33.825603 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 29.93594 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 29.815504 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 30.037064 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 33.649109 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 25.258976 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 25.122686 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 32.170887 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 59.241791 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 35.083778 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 43.975315 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 61.417191 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 30.324318 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 49.509308 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 23.825228 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 14.783563 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 9.989551 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 58.879276 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 47.023426 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 75.458733 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 53.335407 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 48.438606 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 40.556622 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 23.273508 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 23.66316 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 20.926374 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg9317 |
| Aizoaceae | Mesembryanthemum crystallinum | 32 | gene_11432, gene_12899, gene_16124, gene_16294, gene_17039 ... |
| Amaranthaceae | Atriplex hortensis | 6 | Ah009392, Ah018492, Ah018497, Ah018498, Ah035583, Ah035814 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g192230 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg55775, Sbi_jg55776 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg26284, Seu_jg26285 |
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00017849, GOSA_00017850, GOSA_00022226, GOSA_00022227 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl01211, Sgl06296, Sgl06297, Sgl43382, Sgl48185 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000000754, gene:ENSEOMG00000003575 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.3AG0006140, CQ.Regalona.r1.3AG0006160 ... |
| Apiaceae | Apium graveolens | 1 | Ag3G00815 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.443.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G27858, Ftri18G32677 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2689 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2822 |
| Nitrariaceae | Nitraria sibirica | 4 | evm.TU.LG02.136, evm.TU.LG04.1772, evm.TU.LG04.1773 ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027119 |
| Portulacaceae | Portulaca oleracea | 9 | evm.TU.LG02.1381, evm.TU.LG04.894, evm.TU.LG04.895 ... |
| Rhizophoraceae | Bruguiera sexangula | 6 | evm.TU.31081.1, evm.TU.Scaffold_18_RagTag.639 ... |
| Rhizophoraceae | Carallia pectinifolia | 24 | nbisL1-mrna-17670, nbisL1-mrna-19273, nbisL1-mrna-20346 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-15588, nbisL1-mrna-19249 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11465, nbisL1-mrna-13714 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000009l.26, add.evm.TU.utg000012l.40 ... |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005027 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-19727, nbisL1-mrna-19901 |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-136, nbisL1-mrna-14828, nbisL1-mrna-22879 ... |
| Salicaceae | Populus euphratica | 4 | populus_peu18487, populus_peu18522, populus_peu36623 ... |
| Solanaceae | Lycium barbarum | 5 | gene-LOC132599988, gene-LOC132606524, gene-LOC132624588 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI002997200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032338 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.19857_chr07_+, STRG.6052_chr04_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G2719, TC08G0531 |