Basic Information
Locus ID:
Ag3G00812
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 29218789 | 29220837 | + | Ag3G00812 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 47,463.76 Da | 56.34 | 97.95 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52047 | RNI-like | 34 | 325 | 9.42E-15 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 34 | 6.8E-6 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 6 | 201 | 1.9E-9 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 207 | 419 | 1.1E-5 | IPR032675 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10780.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_017228444.1 | PREDICTED: F-box protein At1g10780-like [Daucus carota subsp. sativus] | 0 |
| Q9SAC4 | F-box protein At1g10780 OS=Arabidopsis thaliana OX=3702 GN=At1g10780 PE=2 SV=1 | 0 | |
| TrEMBL | A0A165XY02 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013987 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.353732 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.260355 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.192205 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.371867 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.102623 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.463797 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.098587 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 11.079222 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 10.948553 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 11.538014 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 12.449837 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 7.096486 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 8.717352 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.177758 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.721398 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.938661 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.746494 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.350638 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.671023 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.519897 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.965317 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 4.556983 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 5.835511 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 4.336073 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 1.982703 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 2.096144 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.992826 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 2.549507 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.038785 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.331317 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.209112 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.02318 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.22728 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.451114 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.192075 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.158579 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 7.107039 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.07435 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.079696 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.661046 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.519663 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.37186 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.494015 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.714177 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.225448 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 9.124766 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 6.017391 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.233341 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg26399, jg26483, jg28405, jg30091 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3968 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026117 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g140760 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12803, Sbi_jg53087 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8787 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00026944 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl34071, Sgl34295, Sgl39697 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000001412, gene:ENSEOMG00000025840 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6AG0015710 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30101760, pistato.v30105340 |
| Apiaceae | Apium graveolens | 2 | Ag1G00122, Ag3G00812 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G004500 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712532 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.488.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri3G33557, Ftri8G10694 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G10780.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007703m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g09480.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g005840.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1590 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1706 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g07820 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g14050 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.1394 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002020 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G25908 |
| Poaceae | Echinochloa crus-galli | 7 | AH02.3250, AH02.4369, AH03.2152, BH03.2254, BH08.1880 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0537310, gene-QOZ80_6BG0490560 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0236810.1, HORVU.MOREX.r3.5HG0486180.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_005626, gene-QYE76_031183 |
| Poaceae | Oryza coarctata | 3 | Oco16G009550, Oco17G006400, Oco18G006610 |
| Poaceae | Oryza sativa | 2 | LOC_Os08g36570.1, LOC_Os09g28120.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G202700, gene-BS78_07G162500 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0401369, Pt_Chr0601088, Pt_Chr0701913 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr0G028410, Chr0G028610, Chr16G015560, Chr17G015000 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel3E01G188200, Tel5E01G081300, Tel5E01G383300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG013340, gene_TRIDC3BG017810 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G108600.1, TraesCS3B02G127600.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb037840_P001, Zm00001eb100430_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-30632, nbis-gene-3848, nbis-gene-58742 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g24206, Zma_g30427 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.106, evm.TU.LG03.37 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g07670 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1606 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3717 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20415 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18994 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.344 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005375 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2776 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21806 |
| Salicaceae | Populus euphratica | 3 | populus_peu02527, populus_peu33368, populus_peu33373 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132598708 |
| Solanaceae | Solanum chilense | 1 | SOLCI002646500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012137 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12503 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1728 |
| Zosteraceae | Zostera marina | 4 | Zosma01g38510.v3.1, Zosma01g39780.v3.1, Zosma03g34940.v3.1 ... |