Basic Information
Locus ID:
Ag3G00796
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 26003185 | 26012537 | - | Ag3G00796 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.41 | 35,596.38 Da | 49.59 | 52.52 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 209 | 251 | 8.36571E-28 | - |
| Pfam | PF13639 | Ring finger domain | 209 | 251 | 1.5E-12 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 16 | 51 | 3.6E-14 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 189 | 257 | 1.37E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 172 | 257 | 7.1E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 210 | 250 | 2.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 210 | 251 | 12.090947 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 298 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 329 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19950.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017248246.1 | PREDICTED: E3 ubiquitin-protein ligase RING1-like [Daucus carota subsp. sativus] | 0 |
| P0CH30 | E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A165XXR0 | RING-type E3 ubiquitin transferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013997 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 13.053415 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 8.865029 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.128509 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 10.262638 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 9.826233 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 9.948929 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 9.849706 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 10.407627 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 14.302234 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 16.64814 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 17.863401 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 19.600716 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 17.2397 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 16.917528 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 14.152912 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 13.798068 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 14.917685 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 15.501739 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 12.140634 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 16.726898 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 15.599662 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 17.795885 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 21.036978 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 17.454468 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 16.072039 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 15.587564 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 17.340336 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 14.09064 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 15.828535 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 12.519611 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 12.94267 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 13.236716 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 36.659706 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 20.754581 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 33.399708 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 21.670885 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 16.484282 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 18.774796 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 10.286899 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 9.711226 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 7.277617 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 27.643209 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 20.751848 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 15.196224 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 14.934822 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 32.20052 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 17.322948 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 10.46625 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 8.169525 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 9.853842 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg27555, jg34407, jg5049, jg9711 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_20495, gene_9578 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah016028, Ah038578 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g188770 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25744, Sbi_jg9567 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19070 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00012505, GOSA_00027956 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl65314, Sgl69707, Sgl78061, Sgl80567 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000011796, gene:ENSEOMG00000016051 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.8AG0010720, CQ.Regalona.r1.8BG0013260 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30147660 |
| Apiaceae | Apium graveolens | 3 | Ag1G02146, Ag3G00796, Ag7G01247 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103716715, gene-LOC103722340 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G04233, Ftri1G18141 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G50350.1, AT3G19950.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011690m.g.v1.0, Thhalv10021059m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g37170.v2.2, Sp3g17970.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g043950.2N, BniB04g060150.2N, BniB07g030890.2N ... |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1887 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno10g09970, gene.Cymno14g05480 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g21710 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-5731, nbisL1-mrna-9401 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.199 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00025356 |
| Poaceae | Echinochloa crus-galli | 5 | AH06.15, BH01.2001, BH06.6, CH01.2115, Contig328.59 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0129000, gene-QOZ80_2BG0184200 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0045490.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_011623, gene-QYE76_011624, gene-QYE76_016900 |
| Poaceae | Oryza coarctata | 3 | Oco12G000060, Oco19G006620, Oco20G006610 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g01200.1, LOC_Os10g34590.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G196800, gene-BS78_10G000300 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0203087, Pt_Chr0404062, Pt_Chr0404081, Pt_Chr0701735 ... |
| Poaceae | Sporobolus alterniflorus | 8 | Chr06G012430, Chr09G011780, Chr0G007400, Chr10G000900 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G295800, Tel2E01G1042000, Tel7E01G005900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG024720, gene_TRIDC1BG029840 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS1A02G162400.1.cds1, TraesCS1B02G179000.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb045300_P001, Zm00001eb221240_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-21100, nbis-gene-51247, nbis-gene-58187 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g13430, Zma_g16241, Zma_g31201 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG02.2286, evm.TU.LG04.2602, evm.TU.LG08.73 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g10310 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.985, evm.TU.Scaffold_2_RagTag.1539 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3997, nbisL1-mrna-6630 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11533, nbisL1-mrna-17502 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-18929, nbisL1-mrna-21205 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000009l.130, add.evm.TU.utg000016l.382 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005389, Maker00017210 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17836, nbisL1-mrna-21156 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-21724, nbisL1-mrna-21873 |
| Salicaceae | Populus euphratica | 4 | populus_peu13918, populus_peu23113, populus_peu28156 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132602145, gene-LOC132614726, gene-LOC132632399 |
| Solanaceae | Solanum chilense | 2 | SOLCI002283300, SOLCI006293000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107015510, gene-LOC107016024 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.1529_chr01_-, STRG.17170_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 4 | TC05G0977, TC05G1015, TC07G1561, TC09G1766 |
| Zosteraceae | Zostera marina | 1 | Zosma03g15850.v3.1 |