Basic Information
Locus ID:
Ag3G00779
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
peptidyl-prolyl cis-trans isomerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 23260259 | 23261523 | + | Ag3G00779 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.62 | 27,404.77 Da | 60.21 | 78.52 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00254 | FKBP-type peptidyl-prolyl cis-trans isomerase | 151 | 249 | 3.8E-14 | IPR001179 |
| SUPERFAMILY | SSF54534 | FKBP-like | 79 | 252 | 9.81E-24 | - |
| Gene3D | G3DSA:3.10.50.40 | - | 107 | 255 | 5.2E-22 | - |
| ProSiteProfiles | PS50059 | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 155 | 253 | 15.317501 | IPR001179 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 77 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18170.1 | FKBP-like peptidyl-prolyl cis-trans isomerase family protein. | 0 |
| RefSeq | XP_017244841.1 | PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-2, chloroplastic [Daucus carota subsp. sativus] | 0 |
| Q9LDY5 | Peptidyl-prolyl cis-trans isomerase FKBP17-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FKBP17-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A165XXB6 | peptidylprolyl isomerase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014010 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 58.624477 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 74.548805 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 50.226322 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 57.111519 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 54.517433 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 67.94722 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 33.539757 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 55.71949 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 95.218208 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 84.673965 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 82.279381 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 67.844597 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 92.520386 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 104.191063 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 67.949593 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 67.07782 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 92.54921 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 156.437469 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 237.448929 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 122.683975 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 137.279053 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 44.358967 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 44.797859 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 50.131153 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 74.409164 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 178.519272 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 149.673859 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 249.125092 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 145.670532 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 293.305603 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 285.664642 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 236.975357 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 206.216583 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 131.509888 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 228.432037 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 173.70636 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 272.928986 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 204.787903 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 177.3396 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 297.270538 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 598.590393 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 52.087135 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 26.949802 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 57.981167 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 49.053467 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 55.163303 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 27.836081 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 108.495697 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 73.937836 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 85.415199 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19721 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah007283 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg36074, Sbi_jg458 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4194 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009787 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl25560, Sgl30711 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000029549, gene:ENSEOMG00000043018 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0012730, CQ.Regalona.r1.4BG0014880 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30150080, pistato.v30292130 |
| Apiaceae | Apium graveolens | 1 | Ag3G00779 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G010870 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721396 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.3691.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G08194 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G18170.1, AT1G73655.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008547m.g.v1.0, Thhalv10019056m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g28830.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g027930.2N, BniB03g038800.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2842 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2995 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g01850 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0314s00019.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g05250 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5540 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.103 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G22610 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.875, BH01.1017, CH01.1065 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0219400, gene-QOZ80_3BG0264670 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0336820.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_062854 |
| Poaceae | Oryza coarctata | 2 | Oco05G021420, Oco06G022220 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g50080.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G109100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0104776, Pt_Chr0502648 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr12G030200 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G079300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG042120, gene_TRIDC4BG006840 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G270400.1, TraesCS4B02G043700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb216540_P001, Zm00001eb235390_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-14797, nbis-gene-15897 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2970 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2241, evm.TU.LG14.1414 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g31130 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.720 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14383, nbisL1-mrna-19591 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12340 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000061l.11 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-941 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8398 |
| Salicaceae | Populus euphratica | 1 | populus_peu29724 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633249 |
| Solanaceae | Solanum chilense | 1 | SOLCI003030700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014283 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.17120_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1020 |
| Zosteraceae | Zostera marina | 1 | Zosma01g15100.v3.1 |