Basic Information
Locus ID:
Ag3G00716
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Plant phosphoribosyltransferase C-terminal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 20897469 | 20901073 | - | Ag3G00716 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 116,261.85 Da | 51.96 | 85.49 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04019 | C2C_MCTP_PRT_plant | 465 | 610 | 5.27933E-57 | - |
| CDD | cd04022 | C2A_MCTP_PRT_plant | 7 | 135 | 1.76006E-57 | - |
| CDD | cd08379 | C2D_MCTP_PRT_plant | 623 | 751 | 9.51185E-49 | - |
| CDD | cd08378 | C2B_MCTP_PRT_plant | 308 | 433 | 1.79241E-49 | - |
| Pfam | PF00168 | C2 domain | 7 | 107 | 7.4E-17 | IPR000008 |
| Pfam | PF08372 | Plant phosphoribosyltransferase C-terminal | 880 | 1036 | 1.1E-67 | IPR013583 |
| Pfam | PF00168 | C2 domain | 621 | 734 | 4.4E-22 | IPR000008 |
| Pfam | PF00168 | C2 domain | 464 | 570 | 3.7E-8 | IPR000008 |
| Pfam | PF00168 | C2 domain | 308 | 405 | 1.5E-5 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 7 | 145 | 7.83E-24 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 464 | 612 | 3.13E-18 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 621 | 774 | 1.85E-23 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 308 | 446 | 2.53E-14 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 4 | 149 | 1.0E-24 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 618 | 758 | 1.4E-23 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 450 | 592 | 3.3E-10 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 290 | 431 | 3.9E-10 | IPR035892 |
| SMART | SM00239 | C2_3c | 465 | 564 | 8.2E-4 | IPR000008 |
| SMART | SM00239 | C2_3c | 7 | 110 | 6.0E-13 | IPR000008 |
| SMART | SM00239 | C2_3c | 308 | 407 | 2.4E-7 | IPR000008 |
| SMART | SM00239 | C2_3c | 622 | 731 | 1.3E-13 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 604 | 732 | 15.250849 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 287 | 413 | 12.211321 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 1 | 111 | 18.993446 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 447 | 569 | 12.261034 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 150 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 237 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 178 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 204 | - | - |
KEGG Pathway
KO Term:
Pathway:
ko00270 (Cysteine and methionine metabolism)
map00270 (Cysteine and methionine metabolism)
ko00450 (Selenocompound metabolism)
map00450 (Selenocompound metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17980.1 | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein. | 0 |
| RefSeq | XP_017247173.1 | PREDICTED: protein QUIRKY [Daucus carota subsp. sativus] | 0 |
| Q9FJG3 | Multiple C2 domain and transmembrane region protein 16 OS=Arabidopsis thaliana OX=3702 GN=MCTP16 PE=2 SV=1 | 0 | |
| TrEMBL | A0A165YRM4 | C2 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013475 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 3.280908 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.403113 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.159106 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.616646 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.205665 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.400517 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.473532 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.73671 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 14.020377 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 11.358149 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 13.083955 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 10.66428 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 6.767904 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 8.238843 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.93353 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.564062 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 6.033667 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.762426 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.114192 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 3.923861 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.320804 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 13.165673 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 15.018168 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 14.411107 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 12.776568 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 5.88191 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 6.410533 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.937792 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 5.115766 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.456347 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.641141 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.859883 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.997038 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.391091 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.365024 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.500063 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.453466 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.543262 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.513899 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.537824 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.755552 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.763295 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.620568 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.524003 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.690481 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.50444 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 3.142093 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 7.837539 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 10.960495 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 7.859354 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology