Basic Information
Locus ID:
Ag3G00707
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Der1-like family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 20074047 | 20080234 | - | Ag3G00707 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.61 | 38,279.73 Da | 44.28 | 102.53 | 0.37 |
Protein Domain:
Gene Ontology
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58460.1 | RHOMBOID-like protein 15. | 0 |
| RefSeq | XP_017243643.1 | PREDICTED: rhomboid-like protein 15 [Daucus carota subsp. sativus] | 0 |
| Q8LB17 | Rhomboid-like protein 15 OS=Arabidopsis thaliana OX=3702 GN=RBL15 PE=1 SV=2 | 0 | |
| TrEMBL | A0A165YRU0 | Protein-lysine N-methyltransferase DCAR_013470 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013470 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 35.351456 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 26.7913 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 26.05476 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 27.386789 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 27.041201 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 22.66975 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 22.604708 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 15.879818 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 34.230602 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 34.039925 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 36.624077 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 35.789482 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 33.052113 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 29.183609 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 18.603231 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 21.771214 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 21.184256 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 20.933321 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 19.209007 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 20.422735 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 23.162331 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 23.473522 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 26.248854 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 29.363768 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 24.04355 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 22.562717 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 20.387852 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 17.994772 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 23.667225 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 6.832183 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 11.697503 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 9.60349 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 15.544806 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 22.488415 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 13.161216 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 13.013412 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 6.077284 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 8.30221 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 16.877323 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 9.85906 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 9.895586 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 13.358945 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 12.998973 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 15.863686 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 16.941118 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 15.645467 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 18.498774 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 41.308769 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 40.865192 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 42.07819 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg31863, jg32760 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2339 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah002981 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g109390 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15891, Sbi_jg56669 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg13857 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00027414 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52722, Sgl58008 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006363, gene:ENSEOMG00000021161 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0011850, CQ.Regalona.r1.5BG0012360 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30277350 |
| Apiaceae | Apium graveolens | 1 | Ag3G00707 |
| Arecaceae | Cocos nucifera | 1 | scaffold002727G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720598 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.443.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G14233 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G58460.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006012m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g04420.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g073020.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1223 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1383 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g14020 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g39920 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7757 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1807 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1295, BH01.1344, CH01.1389 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0223600, gene-QOZ80_3BG0268370 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0507520.2 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_063305 |
| Poaceae | Oryza coarctata | 1 | Oco06G020090 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g44830.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G140400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0104571 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G025150, Chr07G023990, Chr12G028090 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G590900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG054170, gene_TRIDC5BG058140 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G370500.1, TraesCS5B02G372800.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb052940_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20526 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3157 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.469, evm.TU.LG26.567 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g00610 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1290 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6307 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18128 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4148 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.370 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017004 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7541 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13473 |
| Salicaceae | Populus euphratica | 1 | populus_peu12360 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607258 |
| Solanaceae | Solanum chilense | 1 | SOLCI000939000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032054 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16084 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0674 |
| Zosteraceae | Zostera marina | 1 | Zosma05g33065.v3.1 |