Basic Information
Locus ID:
Ag3G00681
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Iron-sulfur cluster co-chaperone protein HscB
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 19475145 | 19478433 | + | Ag3G00681 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.12 | 30,665.62 Da | 51.25 | 81.60 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06257 | DnaJ | 104 | 165 | 5.05927E-5 | IPR001623 |
| Pfam | PF07743 | HSCB C-terminal oligomerisation domain | 190 | 259 | 5.3E-15 | IPR009073 |
| SUPERFAMILY | SSF47144 | HSC20 (HSCB), C-terminal oligomerisation domain | 181 | 261 | 7.45E-14 | IPR036386 |
| SUPERFAMILY | SSF46565 | Chaperone J-domain | 103 | 176 | 4.97E-16 | IPR036869 |
| Gene3D | G3DSA:1.10.287.110 | DnaJ domain | 62 | 175 | 2.6E-32 | IPR036869 |
| Gene3D | G3DSA:1.20.1280.20 | - | 181 | 263 | 2.6E-18 | IPR036386 |
| SMART | SM00271 | dnaj_3 | 103 | 168 | 0.001 | IPR001623 |
| TIGRFAM | TIGR00714 | hscB: Fe-S protein assembly co-chaperone HscB | 115 | 260 | 3.6E-26 | IPR004640 |
| ProSiteProfiles | PS50076 | dnaJ domain profile. | 104 | 176 | 10.042146 | IPR001623 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06410.1 | DNAJ heat shock N-terminal domain-containing protein. | 0 |
| RefSeq | XP_017244723.1 | PREDICTED: iron-sulfur cluster co-chaperone protein HscB, mitochondrial [Daucus carota subsp. sativus] | 0 |
| Q8L7K4 | Iron-sulfur cluster co-chaperone protein HscB homolog OS=Arabidopsis thaliana OX=3702 GN=HSCB PE=1 SV=1 | 0 | |
| TrEMBL | A0A165YSF3 | J domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013451 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 20.872007 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.195664 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 8.745532 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 9.711634 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 8.57375 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 8.569997 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 8.945239 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.831694 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 8.143805 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 7.848582 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 7.821206 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 8.169181 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 7.824615 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 5.890128 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.890196 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.205413 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 5.848745 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.743697 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.703543 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 4.112131 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 5.788443 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.391298 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 7.607764 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 5.671315 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.22363 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 3.61682 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.257443 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.955156 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 4.426164 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.87074 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.552006 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.380723 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.463253 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.507907 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.330703 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.039307 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.828091 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.571158 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 10.246199 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 9.96296 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 12.327 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.568462 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 4.259302 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 11.502105 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 11.541418 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 5.891049 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 9.260753 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 18.020967 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 16.284512 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 18.073622 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg15179 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15271 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003081 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g108900 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15791, Sbi_jg56581 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg13799 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001867 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51346, Sgl56593 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006555, gene:ENSEOMG00000023112 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5BG0011890 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30276880 |
| Apiaceae | Apium graveolens | 1 | Ag3G00681 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705745 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G33199 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G06410.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014422m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g36440.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g054390.2N, BniB08g002610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1257 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1418 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g00090 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0420s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g39700 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8517 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1881 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039601 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G13616, Lb4G25821 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.3387, BH05.3379, CH05.3498 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0389480 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0672240.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_021678, gene-QYE76_021692 |
| Poaceae | Oryza coarctata | 2 | Oco23G006070, Oco24G005690 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g27070.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G256300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0107719 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G015490, Chr0G005380, Chr19G010970 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G387800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG027020, gene_TRIDC7BG017550 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G213900.1, TraesCS7B02G121200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb161520_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-12511 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25756 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2752, evm.TU.LG08.414 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g00250 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1077 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4112 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4953 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10177 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.601 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006167 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12511 |
| Salicaceae | Populus euphratica | 1 | populus_peu12388 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132625945 |
| Solanaceae | Solanum chilense | 1 | SOLCI006375400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011850 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.24991_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0661 |
| Zosteraceae | Zostera marina | 1 | Zosma05g33210.v3.1 |