Basic Information
Locus ID:
Ag3G00671
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
BTB POZ domain-containing protein At3g05675-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 19260126 | 19262846 | - | Ag3G00671 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.81 | 49,561.99 Da | 51.38 | 111.64 | 0.12 |
Protein Domain:
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05675.1 | BTB/POZ domain-containing protein. | 0 |
| RefSeq | XP_017248098.1 | PREDICTED: BTB/POZ domain-containing protein At3g05675 [Daucus carota subsp. sativus] | 0 |
| Q8RX01 | BTB/POZ domain-containing protein At3g05675 OS=Arabidopsis thaliana OX=3702 GN=At3g05675 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B7BKA5 | BTB domain-containing protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_037044 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 18.462971 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.169673 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 9.842429 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 7.939617 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 9.833821 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 8.911297 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 9.145618 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.134366 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 15.109997 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 17.008776 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 15.74032 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 15.883766 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 14.605886 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 14.779555 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.050283 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.665228 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.394204 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.17223 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.91303 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.016099 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 5.571799 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 9.609559 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 8.73113 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 8.594571 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.684943 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 7.067275 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.165591 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.204405 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 9.203891 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.274667 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.374587 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.120183 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.871321 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.502336 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.271893 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.307118 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.584689 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.566992 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.978509 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.774833 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.102318 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.763326 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.680415 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 7.144755 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 4.9632 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.113449 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 4.462425 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 19.044029 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 16.170824 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 17.628307 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg31919, jg37380 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_14640, gene_2306 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g098380, BVRB_5g103650 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg15714, Sbi_jg24105, Sbi_jg56517, Sbi_jg7945 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg12091, Seu_jg13741 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001810, GOSA_00010701 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl51466, Sgl52313, Sgl56754, Sgl57577, Sgl57590 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000004132, gene:ENSEOMG00000006888 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.5AG0005170, CQ.Regalona.r1.5AG0011070 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30133630, pistato.v30276570 |
| Apiaceae | Apium graveolens | 2 | Ag11G04683, Ag3G00671 |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G008780, COCNU_09G001690, scaffold030973G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103695508, gene-LOC103701700, gene-LOC103716717 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.3415.V1.1, AsparagusV1_07.3437.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G31838, Ftri2G03110 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G05675.2, AT4G10800.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10020747m.g.v1.0, Thhalv10028868m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g04550.v2.2, Sp6g06700.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g051650.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G0624, Ceq04G0791 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G0718, Cgl04G0898 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g00290, gene.Cymno14g04880 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g12470, gene.Thate04g27520 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6014 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1903, evm.TU.LG10.1588 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00011758, Pov_00013024, Pov_00028473 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G09163 |
| Poaceae | Echinochloa crus-galli | 1 | CH03.3267 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_6AG0507130, gene-QOZ80_6BG0459190 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0505220.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_007052, gene-QYE76_027548, gene-QYE76_027615 |
| Poaceae | Oryza coarctata | 4 | Oco11G001350, Oco12G001260, Oco13G015280, Oco14G016110 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g03840.1, LOC_Os07g47260.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G270800, gene-BS78_10G021800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0700959, Pt_Chr0700960 |
| Poaceae | Sporobolus alterniflorus | 9 | Chr03G011390, Chr10G006210, Chr11G013100, Chr11G023970 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G576800, Tel7E01G131100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG063500, gene_TRIDC5AG052700 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G428700.1.cds1, TraesCS5A02G360300.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb320450_P001, Zm00001eb378460_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40290, nbis-gene-50740 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g29027, Zma_g29899, Zma_g31276 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG10.351, evm.TU.LG13.388, evm.TU.LG17.348 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g01140, gene.Posoc06g11350 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.54, evm.TU.Scaffold_1_RagTag.1332 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18356, nbisL1-mrna-6267 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11325, nbisL1-mrna-18164 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-4111, nbisL1-mrna-8663, nbisL1-mrna-8664 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000007l.182, add.evm.TU.utg000016l.161 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016244 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-23189, nbisL1-mrna-7568 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11037, nbisL1-mrna-13508 |
| Salicaceae | Populus euphratica | 4 | populus_peu03738, populus_peu12408, populus_peu25964 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132625042, gene-LOC132625923 |
| Solanaceae | Solanum chilense | 2 | SOLCI005917000, SOLCI007440600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008520, gene-LOC107015108 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.13821_chr05_+, gene_13226 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3140, TC05G2737 |
| Zosteraceae | Zostera marina | 2 | Zosma01g35460.v3.1, Zosma01g37320.v3.1 |