Basic Information
Locus ID:
Ag3G00670
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
BEL1-like homeodomain protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 19255104 | 19259690 | + | Ag3G00670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.88 | 76,543.14 Da | 45.08 | 67.05 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00086 | homeodomain | 382 | 443 | 2.02119E-12 | IPR001356 |
| Pfam | PF05920 | Homeobox KN domain | 399 | 438 | 1.4E-17 | IPR008422 |
| Pfam | PF07526 | Associated with HOX | 196 | 333 | 9.8E-45 | IPR006563 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | 383 | 449 | 6.84E-17 | IPR009057 |
| Gene3D | G3DSA:1.10.10.60 | - | 385 | 462 | 4.9E-32 | - |
| SMART | SM00574 | prehox3 | 191 | 334 | 2.2E-53 | IPR006563 |
| SMART | SM00389 | HOX_1 | 382 | 446 | 5.3E-9 | IPR001356 |
| ProSiteProfiles | PS50071 | 'Homeobox' domain profile. | 379 | 442 | 12.195484 | IPR001356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 474 | 498 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 177 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 454 | 498 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 454 | 473 | - | - |
| Coils | Coil | Coil | 266 | 286 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35940.1 | BEL1-like homeodomain 1. Encodes a member of the BEL-like homeodomain protein family. Ecotopic expression in the embryo sac leads to defects in nuclear migration and cellularization and embryo sacs with multiple egg cells. Loss of function alleles have no female gametophyte defects. The ecotopic expression phenotype requires KNAT3 because it can be suppressed by loss of KNAT3 function alleles. Localized to the nucleus but interaction with OFP1 relocates it to the cytoplasm. | 0 |
| RefSeq | XP_017247149.1 | PREDICTED: BEL1-like homeodomain protein 1 [Daucus carota subsp. sativus] | 0 |
| Q9SJ56 | BEL1-like homeodomain protein 1 OS=Arabidopsis thaliana OX=3702 GN=BLH1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A165YSM0 | Homeobox domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013443 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 21.386917 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 48.635799 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 42.620304 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 53.497105 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 51.116734 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 56.15799 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 46.497044 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 34.63866 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 14.859763 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 21.574932 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 19.993824 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 13.52717 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 18.559458 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 16.161615 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 75.906303 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 69.093903 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 55.225754 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 72.581993 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 81.405815 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 92.248032 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 70.37516 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 54.382107 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 60.063198 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 58.594707 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 53.817226 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 52.139267 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 49.00811 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 59.412968 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 69.600624 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 29.886822 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 36.743248 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 25.83457 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 117.977135 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 38.726208 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 112.034019 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 60.402992 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 27.414694 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 38.007244 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 18.895254 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 25.624983 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 21.087681 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 71.58107 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 109.844879 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 181.097122 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 205.978424 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 71.752144 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 267.83847 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 28.054525 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 20.800293 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 20.136658 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg15144, jg16416, jg31918, jg3659, jg37633 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_15244, gene_6857 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah003143, Ah027732 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g098400, BVRB_7g171150 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg15713, Sbi_jg26482, Sbi_jg34081, Sbi_jg56516 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg13740, Seu_jg15016 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001809 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51467, Sgl56755 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000006165, gene:ENSEOMG00000006370 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.5AG0011050, CQ.Regalona.r1.5BG0011560 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30055720, pistato.v30276580 |
| Apiaceae | Apium graveolens | 2 | Ag10G02090, Ag3G00670 |
| Arecaceae | Cocos nucifera | 2 | COCNU_15G001270, scaffold019717G000030 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103703148 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.137.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri16G01672, Ftri2G17350, FtriNA24358 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G35940.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016349m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g10020.v2.2, Sp4g18190.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g008450.2N, BniB06g008200.2N, BniB08g022650.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G0790, Ceq05G1875 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G0897, Cgl05G1866 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g00840 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g28650 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-448, nbisL1-mrna-8523 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1904 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015698 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G28605 |
| Poaceae | Echinochloa crus-galli | 4 | AH04.320, BH04.349, CH04.351, CH07.1383 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0675600, gene-QOZ80_9BG0699380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0350220.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_064867 |
| Poaceae | Oryza coarctata | 4 | Oco21G001660, Oco22G002510, Oco23G002260, Oco24G001810 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g06020.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G059900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103895, Pt_Chr0104289 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr07G020940, Chr16G009890, Chr17G008880, Chr31G001270 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G182900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG032040, gene_TRIDC4BG017720 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G200800.1, TraesCS4B02G114600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb202140_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-27100, nbis-gene-53957 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g17597, Zma_g18440 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.2780, evm.TU.LG16.885, evm.TU.LG19.1123 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g21300 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.Scaffold_13_RagTag.544, evm.TU.Scaffold_1_RagTag.1333 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-30542, nbisL1-mrna-4134, nbisL1-mrna-6266 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-18165, nbisL1-mrna-6680, nbisL1-mrna-924 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-10158, nbisL1-mrna-15933, nbisL1-mrna-4110 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000009l.610, evm.TU.utg000015l.289 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00004864, Maker00015402, Maker00016510 |
| Rhizophoraceae | Rhizophora apiculata | 6 | nbisL1-mrna-12519, nbisL1-mrna-18406, nbisL1-mrna-19789 ... |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-13509, nbisL1-mrna-15250, nbisL1-mrna-5694 |
| Salicaceae | Populus euphratica | 5 | populus_peu02468, populus_peu12409, populus_peu25963 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132600640, gene-LOC132603956, gene-LOC132625922 |
| Solanaceae | Solanum chilense | 2 | SOLCI002001000, SOLCI007110400 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107004672, gene-LOC107008001, gene-LOC107023459 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.26373_chr11_+, gene_12200 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G1679, TC05G2739 |
| Zosteraceae | Zostera marina | 1 | Zosma02g01800.v3.1 |