Basic Information
Locus ID:
Ag3G00606
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
DNA binding domain with preference for A/T rich regions
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 17021172 | 17040105 | - | Ag3G00606 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 104,056.93 Da | 46.36 | 73.06 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 185 | 927 | 2.83E-27 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 374 | 794 | 4.2E-25 | IPR015943 |
| SMART | SM00320 | WD40_4 | 563 | 605 | 49.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 720 | 759 | 5.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 614 | 658 | 0.069 | IPR001680 |
| SMART | SM00320 | WD40_4 | 485 | 534 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 662 | 701 | 1.1 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 812 | 827 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 383 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 800 | 827 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 414 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 839 | 865 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 266 | 282 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 300 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19485.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_017247377.1 | PREDICTED: uncharacterized protein LOC108218785 isoform X1 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A162ACN2 | General transcription factor 3C polypeptide 2 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013376 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.46034 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 8.085684 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 7.429032 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 9.198654 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.800202 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 8.205927 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.967306 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.916811 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 9.416516 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 11.439493 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 12.551871 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 12.09115 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 11.669808 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 10.753821 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.374687 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.619954 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.853837 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.826319 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.721149 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 3.030438 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 3.097914 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 6.510036 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.286095 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 6.434426 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.040923 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 7.680557 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.396984 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.085001 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 5.265228 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.918475 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.7397 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.130864 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.937666 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.61592 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.110886 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.331924 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.31525 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.736126 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.406455 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.72238 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.167922 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.886603 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.84164 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 3.686287 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 3.895851 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.772511 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 3.479101 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 13.256019 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 14.016781 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 14.242333 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg15066 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14440 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah031016 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g159850 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg27523, Sbi_jg33061 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg7828 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012238 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl71463, Sgl71464, Sgl75049, Sgl75050 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005281, gene:ENSEOMG00000037969 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30085670 |
| Apiaceae | Apium graveolens | 1 | Ag3G00606 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G018550 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.632.V1.1, AsparagusV1_Unassigned.695.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G00772, Ftri12G13180, Ftri12G33984 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G19485.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006802m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g17360.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g008220.2N, BniB04g034220.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1471 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G1521, Cgl02G1530 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g15840, gene.Cymno10g06170 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0230s00019.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g20360 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6389, nbisL1-mrna-6391 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.435 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00002039, Pov_00023493, Pov_00032255 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G09176, Lb7G33630, Lb7G33631 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3943, BH02.3963, BH07.4273 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0040550, gene-QOZ80_1BG0090600 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0088990.1, HORVU.MOREX.r3.3HG0300870.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_056501 |
| Poaceae | Oryza coarctata | 2 | Oco01G025400, Oco02G026310 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g63910.1, LOC_Os07g27140.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G343100 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0105919, Pt_Chr0105956, Pt_Chr0601406, Pt_Chr0601465 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G004080, Chr02G004090, Chr05G029200, Chr16G015830 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G665400, Tel3E01G590900, Tel5E01G564200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG059300, gene_TRIDC1BG068040 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G402200.1, TraesCS1B02G431300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb147330_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-11324 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9045 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2977, evm.TU.LG16.630 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g19140 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1433 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6160 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4512 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4019 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.462 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016780 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7637 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13609, nbisL1-mrna-13610 |
| Salicaceae | Populus euphratica | 4 | populus_peu07853, populus_peu10811, populus_peu10812 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132629841 |
| Solanaceae | Solanum chilense | 1 | SOLCI000909700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029362 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.1846_chr01_+, gene_5677, gene_6689 |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G2494, TC07G0798 |
| Zosteraceae | Zostera marina | 1 | Zosma06g19610.v3.1 |