halophFGD

Basic Information

Locus ID: Ag3G00537

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Vps16, C-terminal region

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	14831120	14842263	+	Ag3G00537

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.75	94,265.59 Da	39.85	97.80	-0.04

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF04841	Vps16, N-terminal region	9	404	7.5E-83	IPR006926
Pfam	PF04840	Vps16, C-terminal region	506	819	7.9E-68	IPR006925
SUPERFAMILY	SSF101898	NHL repeat	57	275	1.12E-8	-
Gene3D	G3DSA:1.10.150.780	-	642	736	1.2E-29	IPR038132
PIRSF	PIRSF007949	Vps16	2	839	0.0	IPR016534

Gene Ontology

Biological Process:

GO:0006886 (intracellular protein transport) GO:0007033 (vacuole organization)

Cellular Component:

GO:0005737 (cytoplasm)

KEGG Pathway

KO Term:

K20180 (vacuolar protein sorting-associated protein 16)

Pathway:

ko04138 (Autophagy - yeast) map04138 (Autophagy - yeast)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G38020.1	vacuoleless1 (VCL1). necessary for proper vacuole formation and morphogenesis in Arabidopsis
RefSeq	XP_017247314.1	PREDICTED: protein VACUOLELESS1 [Daucus carota subsp. sativus]
Swiss-Prot	Q93VQ0	Protein VACUOLELESS1 OS=Arabidopsis thaliana OX=3702 GN=VCL1 PE=1 SV=1
TrEMBL	A0A5J5A9X1	Protein VACUOLELESS1 OS=Nyssa sinensis OX=561372 GN=F0562_008064 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	26.237949	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	21.51338	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	20.233084	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	23.977312	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	23.198341	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	18.427271	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	20.621675	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	16.532385	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	46.976334	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	45.2463	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	47.391453	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	47.024662	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	43.079639	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	37.463345	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	27.524717	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	30.390276	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	24.667206	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	36.104576	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	30.287945	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	34.21463	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	37.597023	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	33.766479	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	39.786682	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	35.531956	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	34.731289	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	44.530666	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	38.790295	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	34.611488	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	41.050079	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	6.423604		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	9.579524		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	8.396216		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	22.085783		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	14.556787		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	18.404758		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	10.654196		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	5.180692		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	7.167721		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	22.882992	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	15.716164	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	7.87962	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	28.201801	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	28.969282	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	43.360561	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	42.66304	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	23.424267	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	43.695168	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	19.283762	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	18.857447	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	18.781467	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg21266
Aizoaceae	Mesembryanthemum crystallinum	1	gene_9915
Amaranthaceae	Atriplex hortensis	1	Ah024725
Amaranthaceae	Beta vulgaris	1	BVRB_1g012410
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg39306, Sbi_jg54640
Amaranthaceae	Salicornia europaea	1	Seu_jg11155
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00020538
Amaranthaceae	Suaeda glauca	7	Sgl14719, Sgl14720, Sgl15100, Sgl15102, Sgl20228, Sgl20235 ... Sgl20236
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000013457, gene:ENSEOMG00000035222 ... gene:ENSEOMG00000047694
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.1AG0015560, CQ.Regalona.r1.1BG0010120
Anacardiaceae	Pistacia vera	1	pistato.v30013320
Apiaceae	Apium graveolens	1	Ag3G00537
Arecaceae	Cocos nucifera	2	COCNU_06G006530, COCNU_06G006540
Arecaceae	Phoenix dactylifera	1	gene-LOC103722345
Asparagaceae	Asparagus officinalis	1	AsparagusV1_05.2883.V1.1
Asteraceae	Flaveria trinervia	1	Ftri9G02670
Brassicaceae	Arabidopsis thaliana	1	AT2G38020.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10016232m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp4g20340.v2.2
Brassicaceae	Brassica nigra	2	BniB06g006560.2N, BniB08g024150.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq05G1652
Casuarinaceae	Casuarina glauca	1	Cgl05G1645
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno01g09450
Dunaliellaceae	Dunaliella salina	3	Dusal.1144s00002.v1.0, Dusal.1144s00003.v1.0 ... Dusal.3007s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate02g20180
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-6495
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.1068, evm.TU.LG12.92
Plantaginaceae	Plantago ovata	1	Pov_00004271
Plumbaginaceae	Limonium bicolor	1	Lb1G04908
Poaceae	Echinochloa crus-galli	3	AH02.2674, BH02.2748, CH02.3784
Poaceae	Eleusine coracana subsp. coracana	1	gene-QOZ80_1BG0078030
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.3HG0278400.1
Poaceae	Lolium multiflorum	2	gene-QYE76_018547, gene-QYE76_054450
Poaceae	Oryza coarctata	1	Oco02G016870
Poaceae	Oryza sativa	1	LOC_Os01g47650.1
Poaceae	Paspalum vaginatum	1	gene-BS78_03G223800
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0605062, Pt_Chr0605078
Poaceae	Sporobolus alterniflorus	4	Chr02G013340, Chr03G013010, Chr03G013020, Chr05G020390
Poaceae	Thinopyrum elongatum	1	Tel3E01G411700
Poaceae	Triticum dicoccoides	2	gene_TRIDC3AG037150, gene_TRIDC3BG040780
Poaceae	Triticum aestivum	3	TraesCS3A02G247800.1, TraesCS3B02G271600.1 ... TraesCS3D02G243600.1
Poaceae	Zoysia japonica	1	nbis-gene-51721
Poaceae	Zoysia macrostachya	1	Zma_g8393
Portulacaceae	Portulaca oleracea	3	evm.TU.LG04.1285, evm.TU.LG04.1286, evm.TU.LG05.1816
Posidoniaceae	Posidonia oceanica	2	gene.Posoc03g19980, gene.Posoc04g03540
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_5_RagTag.1240
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-11712
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-20153
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-11208
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000006l.725
Rhizophoraceae	Kandelia obovata	1	Maker00013743
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-9819
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-19934
Salicaceae	Populus euphratica	3	populus_peu14988, populus_peu14989, populus_peu32653
Solanaceae	Lycium barbarum	2	gene-LOC132616671, gene-LOC132618089
Solanaceae	Solanum chilense	1	SOLCI000166700
Solanaceae	Solanum pennellii	1	gene-LOC107026192
Tamaricaceae	Reaumuria soongarica	1	STRG.8386_chr05_-
Tamaricaceae	Tamarix chinensis	1	TC11G1841
Zosteraceae	Zostera marina	1	Zosma06g27570.v3.1