halophFGD

Basic Information

Locus ID: Ag3G00527

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: belongs to the protein kinase superfamily

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	13874776	13878028	+	Ag3G00527

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.02	45,144.19 Da	36.70	91.69	-0.20

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd14066	STKc_IRAK	103	375	2.444E-95	-
Pfam	PF00069	Protein kinase domain	98	368	3.6E-44	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	77	372	2.16E-79	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	58	172	1.7E-32	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	173	395	5.3E-60	-
ProSiteProfiles	PS50011	Protein kinase domain profile.	97	376	38.378769	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	221	233	-	IPR008271
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	103	132	-	IPR017441
MobiDBLite	mobidb-lite	consensus disorder prediction	384	407	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G58690.1	Protein kinase superfamily protein.
RefSeq	XP_017243751.1	PREDICTED: serine/threonine-protein kinase CDL1 [Daucus carota subsp. sativus]
Swiss-Prot	Q0WRY5	Probable serine/threonine-protein kinase PBL7 OS=Arabidopsis thaliana OX=3702 GN=PBL7 PE=1 SV=1
TrEMBL	A0A5J5A4L3	Protein kinase domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_010650 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.930629	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.602782	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.355765	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.610449	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.414424	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.723902	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.189541	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.210487	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	21.711666	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	19.238726	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	22.921875	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	21.02491	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	17.810125	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	16.335934	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	1.79846	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	3.243122	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	4.026668	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	6.363111	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	7.049637	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	2.883667	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	3.893028	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	2.497147	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	2.491815	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	4.823728	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	3.807709	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	8.871003	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	10.877686	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	5.390221	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	10.276525	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.35194		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.785131		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	1.838519		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.316118		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	7.935413		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.257284		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.184969		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.549075		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.221939		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	15.33286	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.999809	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.468339	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.375366	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	1.857334	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	1.259174	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	1.50515	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.155393	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	2.411516	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	12.583602	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	10.036392	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	10.301372	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg19304, jg26596
Aizoaceae	Mesembryanthemum crystallinum	1	gene_12011
Amaranthaceae	Atriplex hortensis	2	Ah005918, Ah011745
Amaranthaceae	Beta vulgaris	1	BVRB_9g210060
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg12018, Sbi_jg17026, Sbi_jg46946, Sbi_jg61575
Amaranthaceae	Salicornia europaea	2	Seu_jg21235, Seu_jg304
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00008351, GOSA_00009571
Amaranthaceae	Suaeda glauca	4	Sgl24611, Sgl29759, Sgl80424, Sgl82885
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000019524, gene:ENSEOMG00000029182 ... gene:ENSEOMG00000038849, gene:ENSEOMG00000042278
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.4AG0009320, CQ.Regalona.r1.4BG0009440 ... CQ.Regalona.r1.9AG0009600, CQ.Regalona.r1.9BG0012770
Anacardiaceae	Pistacia vera	2	pistato.v30086940, pistato.v30089210
Apiaceae	Apium graveolens	2	Ag3G00527, Ag7G01627
Arecaceae	Cocos nucifera	3	COCNU_02G002380, COCNU_16G001510, scaffold028023G000010
Arecaceae	Phoenix dactylifera	2	gene-LOC103706865, gene-LOC120112863
Asparagaceae	Asparagus officinalis	2	AsparagusV1_05.1870.V1.1, AsparagusV1_07.872.V1.1
Asteraceae	Flaveria trinervia	3	Ftri17G26167, Ftri5G05457, Ftri6G25655
Brassicaceae	Arabidopsis thaliana	2	AT1G54820.1, AT3G58690.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10006022m.g.v1.0, Thhalv10024152m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp5g04160.v2.2, SpUn0002_0570.v2.2
Brassicaceae	Brassica nigra	2	BniB06g054740.2N, BniB08g073230.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq02G2873
Casuarinaceae	Casuarina glauca	3	Cgl02G2989, Cgl06G1291, Cgl06G1299
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno04g04690, gene.Cymno09g01890
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate04g06010, gene.Thate06g18680
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-7807
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG03.2392, evm.TU.LG04.1694
Plantaginaceae	Plantago ovata	1	Pov_00037024
Plumbaginaceae	Limonium bicolor	4	Lb1G06696, Lb1G06713, Lb3G19516, Lb5G27953
Poaceae	Echinochloa crus-galli	6	AH05.2551, AH05.644, BH05.2647, BH05.697, CH05.799 ... CH06.1519
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_5AG0374110, gene-QOZ80_5AG0401740 ... gene-QOZ80_5BG0422190, gene-QOZ80_5BG0450290
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0030630.1, HORVU.MOREX.r3.1HG0063750.1
Poaceae	Lolium multiflorum	2	gene-QYE76_010447, gene-QYE76_013384
Poaceae	Oryza coarctata	3	Oco09G009440, Oco10G004350, Oco10G009190
Poaceae	Oryza sativa	2	LOC_Os05g11750.2, LOC_Os05g33080.1
Poaceae	Paspalum vaginatum	2	gene-BS78_09G082600, gene-BS78_09G136100
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0501506, Pt_Chr0505164, Pt_Chr0505420
Poaceae	Sporobolus alterniflorus	6	Chr01G021020, Chr12G016950, Chr12G025700, Chr18G004240 ... Chr22G009020, Chr22G013020
Poaceae	Thinopyrum elongatum	2	Tel1E01G228100, Tel1E01G414300
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG017880, gene_TRIDC1AG037470 ... gene_TRIDC1BG021920, gene_TRIDC1BG042540
Poaceae	Triticum aestivum	6	TraesCS1A02G124700.1, TraesCS1A02G249500.1 ... TraesCS1B02G143700.1, TraesCS1B02G260300.1, TraesCS1D02G129100.1, TraesCS1D02G249000.1
Poaceae	Zea mays	3	Zm00001eb283880_P001, Zm00001eb287540_P001 ... Zm00001eb347400_P001
Poaceae	Zoysia japonica	3	nbis-gene-14505, nbis-gene-23775, nbis-gene-23777
Poaceae	Zoysia macrostachya	3	Zma_g26819, Zma_g27847, Zma_g28199
Portulacaceae	Portulaca oleracea	4	evm.TU.LG06.1026, evm.TU.LG08.616, evm.TU.LG11.238 ... evm.TU.LG22.1400
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g11730, gene.Posoc08g02740
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_2_RagTag.2033, evm.TU.Scaffold_9_RagTag.1176
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-20998
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-17569, nbisL1-mrna-8637
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-13706, nbisL1-mrna-18678
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000003l.730, evm.TU.utg000009l.76
Rhizophoraceae	Kandelia obovata	2	Maker00004997, Maker00009340
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-12961, nbisL1-mrna-1328
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-16183, nbisL1-mrna-4893
Salicaceae	Populus euphratica	2	populus_peu13439, populus_peu15780
Solanaceae	Lycium barbarum	2	gene-LOC132618840, gene-LOC132645160
Solanaceae	Solanum chilense	2	SOLCI000020500, SOLCI002633400
Solanaceae	Solanum pennellii	2	gene-LOC107008610, gene-LOC107024452
Tamaricaceae	Reaumuria soongarica	3	STRG.8256_chr05_-, gene_13006, gene_17955
Tamaricaceae	Tamarix chinensis	4	TC01G1958, TC05G2339, TC06G0770, TC11G0315
Zosteraceae	Zostera marina	1	Zosma01g32370.v3.1