Basic Information
Locus ID:
Ag3G00525
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Sec1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 13862215 | 13867829 | + | Ag3G00525 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.99 | 93,568.84 Da | 49.56 | 94.65 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56815 | Sec1/munc18-like (SM) proteins | 198 | 338 | 3.66E-6 | IPR036045 |
| SUPERFAMILY | SSF56815 | Sec1/munc18-like (SM) proteins | 713 | 847 | 7.98E-12 | IPR036045 |
| Gene3D | G3DSA:3.40.50.1910 | - | 627 | 850 | 4.5E-7 | IPR027482 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 350 | 367 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 350 | 371 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G42700.1 | 0 | |
| RefSeq | XP_017248452.1 | PREDICTED: sec1 family domain-containing protein MIP3 [Daucus carota subsp. sativus] | 0 |
| F4IP69 | Sec1 family domain-containing protein MIP3 OS=Arabidopsis thaliana OX=3702 GN=MIP3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A162ACW3 | Sec1 family domain-containing protein MIP3 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013276 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 23.83699 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 19.212162 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 11.850795 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.189807 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 12.627052 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 7.792083 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 10.129689 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.814861 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 13.810795 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 13.591282 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 14.883914 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 16.499369 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 14.893841 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 11.744489 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 9.320193 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 9.695185 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 10.720889 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 13.38802 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.225493 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 11.59948 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 12.999764 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 10.983073 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 12.856845 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 10.755183 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 12.939034 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 13.436495 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 10.365251 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.90027 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 16.133442 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.555178 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.994212 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.239904 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 5.43488 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.039996 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.901696 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.683657 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.442295 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.005744 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 13.129477 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 6.491519 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.127647 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 11.278912 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 12.143006 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 11.896405 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 13.02733 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 10.838494 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 13.430198 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 9.017538 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 7.272569 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 6.727598 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21324 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25995 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah011746 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g210000 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12019, Sbi_jg46947 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21236 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009572 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl80425, Sgl82886 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015387, gene:ENSEOMG00000041012 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0017000, CQ.Regalona.r1.9BG0012730 |
| Apiaceae | Apium graveolens | 1 | Ag3G00525 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G002000 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701250 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.856.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G30553 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G42700.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016247m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g24850.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g001690.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2871 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2987 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g07570 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0362s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g10100 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1691 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008584 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.398, BH04.406, CH04.424 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0671570, gene-QOZ80_9BG0695050 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0349310.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_064690 |
| Poaceae | Oryza coarctata | 2 | Oco10G001940, Oco22G002880 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g06810.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G252400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0104224 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G020660, Chr31G001530 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G177800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG033020, gene_TRIDC4BG017260 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G207700.1, TraesCS4B02G111200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb297610_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-51524 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17619 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1770, evm.TU.LG15.1413 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g19000 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.161 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-28378 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20682 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19034 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000034l.21 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00019016 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-15747, nbisL1-mrna-23105, nbisL1-mrna-23106 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22913 |
| Salicaceae | Populus euphratica | 1 | populus_peu27119 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132629947 |
| Solanaceae | Solanum chilense | 1 | SOLCI001205800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007490 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7469 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G1001 |
| Zosteraceae | Zostera marina | 1 | Zosma02g17800.v3.1 |