Basic Information
Locus ID:
Ag3G00519
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Myb-like DNA-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 13565284 | 13567281 | + | Ag3G00519 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 76,874.32 Da | 46.31 | 68.99 | -1.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00167 | SANT | 460 | 487 | 6.93317E-4 | IPR001005 |
| Pfam | PF13921 | Myb-like DNA-binding domain | 461 | 518 | 1.4E-10 | - |
| SUPERFAMILY | SSF46689 | Homeodomain-like | 459 | 504 | 5.31E-6 | IPR009057 |
| Gene3D | G3DSA:1.10.10.60 | - | 462 | 500 | 2.7E-6 | - |
| Gene3D | G3DSA:1.10.10.60 | - | 501 | 575 | 7.9E-9 | - |
| SMART | SM00717 | sant | 384 | 455 | 1.1E-4 | IPR001005 |
| SMART | SM00717 | sant | 506 | 572 | 0.29 | IPR001005 |
| SMART | SM00717 | sant | 457 | 504 | 0.042 | IPR001005 |
| ProSiteProfiles | PS50090 | Myb-like domain profile. | 458 | 501 | 6.237266 | IPR001005 |
| ProSiteProfiles | PS50090 | Myb-like domain profile. | 502 | 570 | 6.841111 | IPR001005 |
| ProSiteProfiles | PS50090 | Myb-like domain profile. | 572 | 625 | 6.69015 | IPR001005 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 186 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 286 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 190 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41020.1 | myb family transcription factor. | 0 |
| RefSeq | XP_017235980.1 | PREDICTED: RNA polymerase I termination factor-like [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166F8S1 | Transcription termination factor 1 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008318 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 9.327738 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.328412 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.439149 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 8.722281 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.379954 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 8.183556 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 8.3496 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.838242 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 12.756926 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 12.362266 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 14.07502 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 14.604929 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 13.52135 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 10.197403 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.600135 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.521247 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.341423 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.686357 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.78904 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 3.798888 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 3.52142 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 4.005283 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 3.787086 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.79683 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.947762 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 6.631098 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.586424 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.215155 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 5.792688 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.186775 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.66902 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.224929 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.748215 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.336429 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.136619 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.549685 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.941364 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.687687 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.058281 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.455956 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.475179 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 7.077899 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 7.398254 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 26.830685 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 10.516556 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 5.261188 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 14.567353 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 4.924232 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 5.862702 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.245849 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg13033, jg13041 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18355 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah016576, Ah024458 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g147130, BVRB_6g147180 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg12825, Sbi_jg20559, Sbi_jg23211, Sbi_jg53062 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg17036, Seu_jg8808 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00009541, GOSA_00018676, GOSA_00022992 |
| Amaranthaceae | Suaeda glauca | 9 | Sgl03348, Sgl08418, Sgl34042, Sgl34175, Sgl39429, Sgl39469 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014196, gene:ENSEOMG00000031086 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0008780, CQ.Regalona.r1.8BG0009060 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30220740 |
| Apiaceae | Apium graveolens | 2 | Ag3G00519, Ag7G00473 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G003190 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711972 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.328.V1.1, AsparagusV1_07.3467.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G19746, Ftri4G07021 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G41020.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027663m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g00890.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g025450.2N, BniB01g025490.2N, BniB01g026750.2N ... |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0211 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno11g11280, gene.Cymno15g02830 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g33300 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.873 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00002987, Pov_00017560, Pov_00030641 |
| Plumbaginaceae | Limonium bicolor | 8 | Lb1G07287, Lb2G08527, Lb2G10135, Lb3G20048, Lb3G20049 ... |
| Poaceae | Echinochloa crus-galli | 3 | AH06.1236, BH06.1286, CH06.1476 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0674530.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_004389, gene-QYE76_054473 |
| Poaceae | Oryza coarctata | 4 | Oco09G004370, Oco10G004420, Oco11G007860, Oco24G002870 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g19980.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G055900 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0306903, Pt_Chr0306904, Pt_Chr0404411, Pt_Chr0700219 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G000240, Chr24G012200, Chr24G012220, Chr27G017400 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G402400 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG025630, gene_TRIDC5BG026770 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS5A02G153800.1.cds1, TraesCS7A02G219600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb172100_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-74 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7092 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG03.141, evm.TU.LG03.3, evm.TU.LG10.751 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g06840 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13045 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-17265, nbisL1-mrna-17307 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000025l.58, add.evm.TU.utg000025l.76 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00012213, Maker00012222 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-20150, nbisL1-mrna-20172 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-22970, nbisL1-mrna-9070, nbisL1-mrna-9071 |
| Salicaceae | Populus euphratica | 3 | populus_peu28842, populus_peu34803, populus_peu34804 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132609790, gene-LOC132609794, gene-LOC132612294 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI005823700, SOLCI007127000 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107012193, gene-LOC107027910, gene-LOC107028977 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.21960_chr08_-, STRG.25011_chr08_-, gene_13140 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3603, TC01G3610 |
| Zosteraceae | Zostera marina | 1 | Zosma06g11740.v3.1 |