halophFGD

Basic Information

Locus ID: Ag3G00508

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: G-type lectin S-receptor-like serine threonine-protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	13278429	13281320	-	Ag3G00508

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.93	90,435.00 Da	32.00	83.98	-0.15

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00028	B_lectin	48	156	8.05972E-27	IPR001480
CDD	cd14066	STKc_IRAK	500	765	5.40456E-93	-
Pfam	PF01453	D-mannose binding lectin	85	167	8.9E-17	IPR001480
Pfam	PF00069	Protein kinase domain	498	761	1.4E-51	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	476	764	2.16E-79	IPR011009
SUPERFAMILY	SSF51110	alpha-D-mannose-specific plant lectins	82	207	1.01E-22	IPR036426
Gene3D	G3DSA:2.90.10.10	-	46	155	1.4E-15	IPR036426
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	569	770	1.5E-62	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	458	568	1.7E-31	-
SMART	SM00108	blect_4	43	156	9.9E-27	IPR001480
SMART	SM00220	serkin_6	494	767	7.9E-34	IPR000719
PIRSF	PIRSF000641	SRK	7	811	4.7E-201	IPR024171
ProSiteProfiles	PS50011	Protein kinase domain profile.	494	767	37.728607	IPR000719
ProSiteProfiles	PS50927	Bulb-type lectin domain profile.	37	154	13.502035	IPR001480
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	614	626	-	IPR008271
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	500	522	-	IPR017441

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0004674 (protein serine/threonine kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G32300.1	S-domain-2 5.
RefSeq	XP_017245794.1	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Daucus carota subsp. sativus]
Swiss-Prot	Q8RWZ5	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana OX=3702 GN=SD25 PE=1 SV=1
TrEMBL	A0A165ZN47	Receptor-like serine/threonine-protein kinase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008988 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.770398	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	2.025344	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	1.565031	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	2.074293	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	2.100509	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.728813	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.872729	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.459956	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	15.468673	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	13.335926	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	15.13778	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	10.376917	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	10.210789	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	8.174749	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	1.826112	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	2.559974	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.780787	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	1.667575	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	1.238523	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	1.93517	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	2.307648	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1.528631	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.756996	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.585897	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	1.410769	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.886856	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.476494	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	1.371057	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.761416	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.724426		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	1.043905		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	1.189668		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	1.000046		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	2.138555		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	1.427617		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.855169		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.56072		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.842097		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	4.10357	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	2.043907	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.78119	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.506361	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	3.647948	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	1.341018	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.939547	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.375682	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	2.938135	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	5.842091	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	4.079682	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	3.374012	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg36590, jg4619
Aizoaceae	Mesembryanthemum crystallinum	2	gene_25178, gene_25180
Amaranthaceae	Atriplex hortensis	2	Ah010571, Ah034697
Amaranthaceae	Beta vulgaris	2	BVRB_2g030270, BVRB_2g030280
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg21815, Sbi_jg21817, Sbi_jg29471, Sbi_jg29472
Amaranthaceae	Salicornia europaea	2	Seu_jg15931, Seu_jg15932
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00005171, GOSA_00005172, GOSA_00008551, GOSA_00008552
Amaranthaceae	Suaeda glauca	8	Sgl55923, Sgl61929, Sgl63227, Sgl63228, Sgl63362, Sgl63363 ... Sgl67839, Sgl67840
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000016950, gene:ENSEOMG00000050154 ... gene:ENSEOMG00000050611
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.1BG0021250, CQ.Regalona.r1.1BG0021260 ... CQ.Regalona.r1.2AG0022920, CQ.Regalona.r1.2AG0022930, CQ.Regalona.r1.7BG0009880, CQ.Regalona.r1.9AG0014750
Anacardiaceae	Pistacia vera	3	pistato.v30128210, pistato.v30128230, pistato.v30250080
Apiaceae	Apium graveolens	4	Ag11G04428, Ag3G00508, Ag6G02488, Ag7G01957
Arecaceae	Cocos nucifera	1	scaffold102186G000010
Arecaceae	Phoenix dactylifera	1	gene-LOC120111958
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.2484.V1.1, AsparagusV1_01.2486.V1.1
Asteraceae	Flaveria trinervia	2	Ftri16G05763, Ftri16G06898
Brassicaceae	Arabidopsis thaliana	1	AT4G32300.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10024411m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp7g30070.v2.2
Brassicaceae	Brassica nigra	5	BniB02g085810.2N, BniB03g010020.2N, BniB05g005760.2N ... BniB05g005780.2N, BniB05g005790.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq02G0310, Ceq02G0313, Ceq02G0314, Ceq04G2345
Casuarinaceae	Casuarina glauca	4	Cgl02G0322, Cgl02G0324, Cgl02G0325, Cgl04G2550
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno01g13590, gene.Cymno06g01850
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g32480, gene.Thate06g14950
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-296, nbisL1-mrna-4498
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.479, evm.TU.LG01.480, evm.TU.LG07.1450
Plantaginaceae	Plantago ovata	4	Pov_00013308, Pov_00013322, Pov_00013341, Pov_00013351
Plumbaginaceae	Limonium bicolor	4	Lb0G37072, Lb0G37859, Lb0G37860, Lb3G18277
Poaceae	Echinochloa crus-galli	3	AH06.1437, BH06.1443, CH06.1600
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_6AG0519810, gene-QOZ80_6BG0472010
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.3HG0233690.1 ... HORVU.MOREX.r3.7HG0676380.1.CDS1
Poaceae	Lolium multiflorum	1	gene-QYE76_029684
Poaceae	Oryza coarctata	2	Oco11G008660, Oco12G008650
Poaceae	Oryza sativa	1	LOC_Os06g29810.2
Poaceae	Paspalum vaginatum	1	gene-BS78_06G117000
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0403910
Poaceae	Sporobolus alterniflorus	4	Chr10G002270, Chr11G016380, Chr14G005760, Chr21G006270
Poaceae	Thinopyrum elongatum	3	Tel3E01G161700, Tel3E01G778400, Tel7E01G415100
Poaceae	Triticum dicoccoides	4	gene_TRIDC3AG011020, gene_TRIDC3BG014880 ... gene_TRIDC7AG029680, gene_TRIDC7BG020420
Poaceae	Triticum aestivum	6	TraesCS3A02G091800.1, TraesCS3B02G107000.1 ... TraesCS3D02G480200.1, TraesCS7A02G230900.1.cds1, TraesCS7B02G196400.2.cds1, TraesCS7D02G231000.1.cds1
Poaceae	Zea mays	1	Zm00001eb382120_P001
Poaceae	Zoysia japonica	3	nbis-gene-28870, nbis-gene-43765, nbis-gene-55176
Poaceae	Zoysia macrostachya	2	Zma_g29644, Zma_g31854
Portulacaceae	Portulaca oleracea	2	evm.TU.LG04.1781, evm.TU.LG06.593
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g25420
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_4_RagTag.1271
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-27144, nbisL1-mrna-27328
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-20473
Rhizophoraceae	Kandelia candel	1	add.evm.TU.utg000008l.297
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-20635, nbisL1-mrna-20636
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-978
Salicaceae	Populus euphratica	1	populus_peu12900
Solanaceae	Lycium barbarum	1	gene-LOC132636203
Solanaceae	Solanum chilense	1	SOLCI001146000
Solanaceae	Solanum pennellii	1	gene-LOC107026740
Tamaricaceae	Reaumuria soongarica	3	STRG.19219_chr07_-, STRG.944_chr01_-, gene_10939
Tamaricaceae	Tamarix chinensis	4	TC01G1512, TC02G0509, TC08G2198, TC08G2202
Zosteraceae	Zostera marina	1	Zosma05g28640.v3.1