Basic Information
Locus ID:
Ag3G00504
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 12735089 | 12738871 | + | Ag3G00504 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 118,561.48 Da | 38.86 | 102.05 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 319 | 378 | 4.7E-9 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 772 | 977 | 1.0E-37 | IPR000719 |
| Pfam | PF13516 | Leucine Rich repeat | 102 | 115 | 0.53 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 415 | 434 | 0.32 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 37 | 74 | 2.1E-12 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 364 | 607 | 1.19E-56 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 752 | 1043 | 2.46E-61 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 55 | 396 | 1.02E-60 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 610 | 678 | 7.85E-10 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 238 | 333 | 6.2E-29 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 35 | 145 | 3.4E-32 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 429 | 692 | 1.6E-71 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 744 | 841 | 3.6E-17 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 842 | 1063 | 1.7E-52 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 146 | 237 | 4.5E-22 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 334 | 428 | 4.3E-30 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 100 | 124 | 21.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 555 | 579 | 2.6 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 148 | 172 | 78.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 341 | 365 | 28.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 293 | 317 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 437 | 461 | 47.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 768 | 1041 | 2.2E-22 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 768 | 1046 | 32.96545 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 630 | 652 | 7.919874 | IPR001611 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 31 | 5.0 | - |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 774 | 797 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 886 | 898 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G56040.2 | Leucine-rich receptor-like protein kinase family protein. | 0 |
| RefSeq | XP_017246720.1 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g26540 isoform X1 [Daucus carota subsp. sativus] | 0 |
| F4K6B8 | Leucine-rich repeat receptor-like serine/threonine-protein kinase RGI4 OS=Arabidopsis thaliana OX=3702 GN=RGI4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A165YY33 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013260 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.328286 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.152358 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.591555 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.844485 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.798171 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.2525 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.317447 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.032339 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 26.923603 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 24.592279 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 29.216719 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 24.863852 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 26.834082 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 25.389145 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.046261 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.37846 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.271199 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.620224 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.889009 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.164345 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.532443 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 2.03907 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 2.306788 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 2.304994 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.039699 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.823365 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.099333 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.514693 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 3.545177 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 10.342023 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 9.320408 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 7.270695 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.755379 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.365014 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.636581 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.871914 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.169764 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.640079 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 45.533566 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 41.839153 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 23.122322 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.224975 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.507898 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.640011 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.22452 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 8.095986 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 3.685375 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.354979 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg13026, jg20206, jg21635, jg25902 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_19496, gene_7116 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah000564, Ah009124 |
| Amaranthaceae | Beta vulgaris | 4 | BVRB_2g039770, BVRB_2g039860, BVRB_4g090980, BVRB_5g117660 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg18585, Sbi_jg30582, Sbi_jg37009, Sbi_jg58671 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg28538, Seu_jg4854 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00014901, GOSA_00017285 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl13760, Sgl18938, Sgl23613, Sgl28823, Sgl55193, Sgl60443 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000007808, gene:ENSEOMG00000023006 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.2BG0000320, CQ.Regalona.r1.4BG0026570 ... |
| Anacardiaceae | Pistacia vera | 8 | pistato.v30139620, pistato.v30151750, pistato.v30151770 ... |
| Apiaceae | Apium graveolens | 2 | Ag3G00504, Ag4G00265 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G010720, COCNU_11G006090 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103703785, gene-LOC103721265 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.2735.V1.1, AsparagusV1_01.525.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri16G00960, Ftri18G30640, Ftri2G19326 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G26540.1, AT5G56040.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10012511m.g.v1.0, Thhalv10024272m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g17860.v2.2, Sp7g24490.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g034820.2N, BniB05g010860.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G1528, Ceq04G1975 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1693, Cgl04G2162 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g04500, gene.Cymno01g09700 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g17550 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.2080, evm.TU.LG10.700 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00022158, Pov_00037970 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G11850 |
| Poaceae | Echinochloa crus-galli | 12 | AH02.502, AH03.2321, AH05.1112, AH08.1917, BH02.520 ... |
| Poaceae | Eleusine coracana subsp. coracana | 8 | gene-QOZ80_1AG0011300, gene-QOZ80_1BG0059960 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.1HG0026470.1, HORVU.MOREX.r3.3HG0233780.1 ... |
| Poaceae | Lolium multiflorum | 7 | gene-QYE76_006034, gene-QYE76_009826, gene-QYE76_009827 ... |
| Poaceae | Oryza coarctata | 6 | Oco02G002850, Oco09G003290, Oco10G003240, Oco15G011930 ... |
| Poaceae | Oryza sativa | 4 | LOC_Os01g07560.1, LOC_Os05g07740.1, LOC_Os08g38560.1 ... |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_02G217900, gene-BS78_03G049900, gene-BS78_K258100 ... |
| Poaceae | Puccinellia tenuiflora | 7 | Pt_Chr0200401, Pt_Chr0207400, Pt_Chr0403311, Pt_Chr0501686 ... |
| Poaceae | Sporobolus alterniflorus | 13 | Chr03G005030, Chr05G010600, Chr08G005480, Chr0G015180 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel1E01G211400, Tel3E01G162300, Tel5E01G406800 ... |
| Poaceae | Triticum dicoccoides | 9 | gene_TRIDC1AG014220, gene_TRIDC1BG019950 ... |
| Poaceae | Triticum aestivum | 12 | TraesCS1A02G113800.1, TraesCS1B02G134100.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb101560_P001, Zm00001eb199400_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-23539 |
| Poaceae | Zoysia macrostachya | 5 | Zma_g23183, Zma_g24297, Zma_g26515, Zma_g32747, Zma_g7679 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.2450, evm.TU.LG02.641, evm.TU.LG09.1803 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g08970, gene.Posoc03g20480 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_4_RagTag.454, evm.TU.Scaffold_7_RagTag.44 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19712, nbisL1-mrna-28909 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14009, nbisL1-mrna-7941 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-1875, nbisL1-mrna-22359 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.103, evm.TU.utg000028l.22 |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00000018, Maker00001155, Maker00010567 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14615, nbisL1-mrna-7980 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1444, nbisL1-mrna-22567 |
| Salicaceae | Populus euphratica | 6 | populus_peu00052, populus_peu00053, populus_peu17054 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132617725, gene-LOC132632619 |
| Solanaceae | Solanum chilense | 2 | SOLCI000499000, SOLCI007106200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107014803, gene-LOC107026518 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.19992_chr07_+, gene_13070 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G2558, TC08G2477 |