Basic Information
Locus ID:
Ag3G00501
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
heat shock
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 12647935 | 12651252 | - | Ag3G00501 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.00 | 80,345.44 Da | 39.48 | 83.39 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16927 | HATPase_Hsp90-like | 14 | 202 | 2.81292E-110 | - |
| Pfam | PF02518 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 27 | 181 | 2.5E-14 | IPR003594 |
| Pfam | PF00183 | Hsp90 protein | 184 | 689 | 1.7E-232 | IPR001404 |
| SUPERFAMILY | SSF55874 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 5 | 213 | 5.27E-74 | IPR036890 |
| SUPERFAMILY | SSF110942 | HSP90 C-terminal domain | 542 | 663 | 2.62E-37 | IPR037196 |
| SUPERFAMILY | SSF54211 | Ribosomal protein S5 domain 2-like | 263 | 518 | 5.08E-108 | IPR020568 |
| Gene3D | G3DSA:3.30.230.80 | - | 262 | 430 | 1.3E-84 | - |
| Gene3D | G3DSA:1.20.120.790 | - | 518 | 667 | 5.5E-65 | IPR037196 |
| Gene3D | G3DSA:3.40.50.11260 | - | 431 | 517 | 1.1E-40 | - |
| Gene3D | G3DSA:3.30.565.10 | - | 2 | 230 | 9.1E-97 | IPR036890 |
| SMART | SM00387 | HKATPase_4 | 27 | 182 | 2.8E-7 | IPR003594 |
| PIRSF | PIRSF002583 | HSP90_HTPG | 1 | 699 | 8.8E-256 | IPR001404 |
| ProSitePatterns | PS00298 | Heat shock hsp90 proteins family signature. | 25 | 34 | - | IPR019805 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 188 | 206 | 1.9E-84 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 118 | 140 | 1.9E-84 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 5 | 25 | 1.9E-84 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 26 | 48 | 1.9E-84 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 75 | 92 | 1.9E-84 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 93 | 110 | 1.9E-84 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 170 | 187 | 1.9E-84 | IPR020575 |
| Hamap | MF_00505 | Chaperone protein HtpG [htpG]. | 2 | 664 | 27.114487 | IPR001404 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 248 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 238 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 673 | 699 | - | - |
| Coils | Coil | Coil | 522 | 542 | - | - |
| Coils | Coil | Coil | 220 | 257 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
map04217 (Necroptosis)
ko04612 (Antigen processing and presentation)
map04612 (Antigen processing and presentation)
map04621 (NOD-like receptor signaling pathway)
ko04626 (Plant-pathogen interaction)
map04626 (Plant-pathogen interaction)
map04657 (IL-17 signaling pathway)
map04659 (Th17 cell differentiation)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G56030.1 | heat shock protein 81-2. A member of heat shock protein 90 (HSP90) gene family. Expressed in all tissues and abundant in root apical meristem, pollen and tapetum. Expression is NOT heat-induced but induced by IAA and NaCl. Interacts with HsfA1d in the cytosol and the nucleus and negatively regulates HsfA1d. Did not bind to AtHsfA4c. | 0 |
| RefSeq | XP_017252069.1 | PREDICTED: heat shock protein 90-3 isoform X1 [Daucus carota subsp. sativus] | 0 |
| P55737 | Heat shock protein 90-2 OS=Arabidopsis thaliana OX=3702 GN=HSP90-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A162ACX6 | HATPase_c domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013256 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 313.751648 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 220.964783 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 198.025589 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 185.199142 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 176.328354 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 184.461731 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 123.393227 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 155.782028 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 614.591553 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 643.965637 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 617.667969 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 720.457214 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 592.740112 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 598.108765 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 134.531265 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 196.917328 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 224.289078 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 194.432281 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 200.117584 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 244.698166 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 230.682114 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 312.272095 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 321.654144 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 318.813293 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 317.789734 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 263.088104 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 226.850861 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 213.051025 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 253.605621 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 125.875237 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 133.173431 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 134.734955 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 222.49707 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 324.771973 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 373.127167 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 154.983353 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 118.983894 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 124.948265 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 371.342957 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 137.874237 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 61.035469 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 865.465393 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1087.061279 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1102.45166 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 331.687866 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 472.300964 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 356.496002 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 321.902618 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 259.982788 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 247.964249 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology