halophFGD

Basic Information

Locus ID: Ag3G00491

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: glycerophosphoryl diester phosphodiesterase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	12477029	12484583	+	Ag3G00491

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.32	82,762.66 Da	38.67	98.51	0.05

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd08603	GDPD_SHV3_repeat_1	39	337	2.84274E-156	-
Pfam	PF03009	Glycerophosphoryl diester phosphodiesterase family	46	332	4.9E-7	IPR030395
Pfam	PF03009	Glycerophosphoryl diester phosphodiesterase family	359	648	3.2E-27	IPR030395
SUPERFAMILY	SSF51695	PLC-like phosphodiesterases	38	336	1.31E-42	IPR017946
SUPERFAMILY	SSF51695	PLC-like phosphodiesterases	353	650	5.76E-42	IPR017946
Gene3D	G3DSA:3.20.20.190	Phosphatidylinositol (PI) phosphodiesterase	352	652	3.9E-47	IPR017946
Gene3D	G3DSA:3.20.20.190	Phosphatidylinositol (PI) phosphodiesterase	37	336	1.8E-37	IPR017946
ProSiteProfiles	PS51704	GP-PDE domain profile.	39	338	33.468681	IPR030395
ProSiteProfiles	PS51704	GP-PDE domain profile.	354	653	32.697269	IPR030395
MobiDBLite	mobidb-lite	consensus disorder prediction	709	726	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	690	726	-	-

Gene Ontology

Biological Process:

GO:0006629 (lipid metabolic process)

Molecular Function:

GO:0008081 (phosphoric diester hydrolase activity)

KEGG Pathway

KO Term:

K01126 (glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46])

Pathway:

ko00564 (Glycerophospholipid metabolism) map00564 (Glycerophospholipid metabolism)

Reaction:

R01030 (sn-Glycero-3-phosphocholine + H2O <=> Choline + sn-Glycerol 3-phosphate) R01470 (sn-Glycero-3-phosphoethanolamine + H2O <=> Ethanolamine + sn-Glycerol 3-phosphate)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G26690.1	PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development.
RefSeq	XP_017247907.1	PREDICTED: glycerophosphodiester phosphodiesterase GDPDL3-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9SZ11	Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3
TrEMBL	A0A162AD21	glycerophosphodiester phosphodiesterase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013206 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	31.767334	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	9.929495	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	13.693523	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	16.246418	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	16.713348	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	18.919817	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	8.060311	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	2.642303	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	190.626526	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	191.038742	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	215.763657	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	132.891296	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	172.00148	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	135.718201	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	24.621353	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	29.237368	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	40.324306	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	115.430145	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	85.707924	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	129.380859	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	175.679138	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	48.246159	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	52.172474	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	47.96603	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	58.251965	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	120.408951	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	82.371796	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	124.310432	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	81.961945	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	36.257088		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	60.054638		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	52.999046		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	223.782898		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	112.863235		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	241.739059		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	110.347427		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	73.735161		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	71.279655		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	207.284134	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	549.345581	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	232.960846	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	13.008627	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	7.219989	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	17.039803	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	30.028582	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	13.51163	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	42.976852	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	26.616879	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	19.709415	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	30.869844	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg20162, jg24582, jg38412, jg3968
Aizoaceae	Mesembryanthemum crystallinum	3	gene_7182, gene_7183, gene_8905
Amaranthaceae	Atriplex hortensis	2	Ah008991, Ah018897
Amaranthaceae	Beta vulgaris	3	BVRB_4g089710, BVRB_4g089720, BVRB_8g192510
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg18411, Sbi_jg18412, Sbi_jg25424, Sbi_jg36816 ... Sbi_jg36817, Sbi_jg9265
Amaranthaceae	Salicornia europaea	4	Seu_jg19327, Seu_jg2604, Seu_jg4729, Seu_jg4731
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00011111, GOSA_00017391, GOSA_00017392, GOSA_00017393
Amaranthaceae	Suaeda glauca	5	Sgl23498, Sgl28628, Sgl28629, Sgl41838, Sgl46638
Amaranthaceae	Chenopodium album	10	gene:ENSEOMG00000008792, gene:ENSEOMG00000010910 ... gene:ENSEOMG00000011018, gene:ENSEOMG00000028441, gene:ENSEOMG00000030652, gene:ENSEOMG00000032962, gene:ENSEOMG00000038408, gene:ENSEOMG00000041343, gene:ENSEOMG00000042039, gene:ENSEOMG00000044067
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.2BG0001770, CQ.Regalona.r1.4BG0025310 ... CQ.Regalona.r1.8AG0023490, CQ.Regalona.r1.8BG0018880
Anacardiaceae	Pistacia vera	4	pistato.v30153960, pistato.v30155660, pistato.v30266220 ... pistato.v30266260
Apiaceae	Apium graveolens	3	Ag2G00436, Ag3G00491, Ag6G02536
Arecaceae	Cocos nucifera	5	COCNU_01G007040, COCNU_01G010820, COCNU_01G012280 ... COCNU_11G007630, COCNU_11G010750
Arecaceae	Phoenix dactylifera	5	gene-LOC103702318, gene-LOC103713563, gene-LOC103714246 ... gene-LOC103719050, gene-LOC103722432
Asparagaceae	Asparagus officinalis	4	AsparagusV1_01.251.V1.1, AsparagusV1_05.1265.V1.1 ... AsparagusV1_05.3049.V1.1, AsparagusV1_05.3235.V1.1
Asteraceae	Flaveria trinervia	4	Ftri15G05747, Ftri16G33942, Ftri2G29718, Ftri4G31944
Brassicaceae	Arabidopsis thaliana	7	AT1G66970.2, AT1G66980.1, AT3G20520.1, AT4G26690.1 ... AT5G55480.1, AT5G58050.1, AT5G58170.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10012748m.g.v1.0, Thhalv10012762m.g.v1.0 ... Thhalv10018170m.g.v1.0, Thhalv10020151m.g.v1.0, Thhalv10024494m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp3g18520.v2.2, Sp5g21930.v2.2, Sp6g17360.v2.2 ... Sp7g24660.v2.2, SpUn0870_0010.v2.2
Brassicaceae	Brassica nigra	16	BniB01g043270.2N, BniB02g034150.2N, BniB02g037430.2N ... BniB02g082560.2N, BniB05g010710.2N, BniB05g037630.2N, BniB05g037700.2N, BniB05g062990.2N, BniB08g013440.2N, BniB08g015200.2N, BniB08g024300.2N, BniB08g035060.2N, BniB08g049980.2N, BniB08g050010.2N, BniB08g050590.2N, BniB08g050620.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq01G1400, Ceq01G1401, Ceq03G2532
Casuarinaceae	Casuarina glauca	5	Cgl01G1572, Cgl01G1573, Cgl01G1579, Cgl01G1580, Cgl03G2672
Cymodoceaceae	Cymodocea nodosa	7	gene.Cymno02g05680, gene.Cymno02g05690, gene.Cymno02g05700 ... gene.Cymno02g05710, gene.Cymno03g09360, gene.Cymno04g07810, gene.Cymno17g05020
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g18120, gene.Thate03g20930, gene.Thate07g08490
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-1466, nbisL1-mrna-9061
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG05.1959, evm.TU.LG07.207
Plantaginaceae	Plantago ovata	2	Pov_00000908, Pov_00035939
Plumbaginaceae	Limonium bicolor	3	Lb1G03382, Lb2G10920, Lb5G28127
Poaceae	Echinochloa crus-galli	15	AH01.4089, AH06.2401, AH07.2400, AH07.634, AH08.1994 ... BH06.2196, BH07.2217, BH07.760, BH08.2095, BH09.1442, CH01.1596, CH06.2415, CH07.2285, CH08.2272, CH09.1549
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_2AG0104280, gene-QOZ80_2AG0135770 ... gene-QOZ80_2BG0157640, gene-QOZ80_2BG0191300, gene-QOZ80_4AG0313930, gene-QOZ80_4BG0345100, gene-QOZ80_6BG0470650, gene-QOZ80_8AG0636350
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.1HG0081620.1, HORVU.MOREX.r3.2HG0174760.1 ... HORVU.MOREX.r3.6HG0575670.1, HORVU.MOREX.r3.6HG0589780.1, HORVU.MOREX.r3.7HG0679100.1
Poaceae	Lolium multiflorum	5	gene-QYE76_016133, gene-QYE76_021171, gene-QYE76_023344 ... gene-QYE76_029936, gene-QYE76_044669
Poaceae	Oryza coarctata	9	Oco03G004460, Oco03G013950, Oco04G004450, Oco04G014340 ... Oco07G008330, Oco08G008230, Oco10G006000, Oco15G011480, Oco16G011090
Poaceae	Oryza sativa	5	LOC_Os02g09450.1, LOC_Os02g37590.1, LOC_Os04g39610.1 ... LOC_Os08g39350.1, LOC_Os12g27102.1
Poaceae	Paspalum vaginatum	5	gene-BS78_04G065900, gene-BS78_04G178700 ... gene-BS78_06G130900, gene-BS78_07G181800, gene-BS78_10G202100
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0102659, Pt_Chr0202239, Pt_Chr0204385, Pt_Chr0302388 ... Pt_Chr0403838, Pt_Chr0403884, Pt_Chr0503953
Poaceae	Sporobolus alterniflorus	9	Chr06G008760, Chr09G013060, Chr13G008880, Chr13G008890 ... Chr15G010310, Chr16G016800, Chr17G016160, Chr23G010850, Chr26G008880
Poaceae	Thinopyrum elongatum	5	Tel1E01G541200, Tel2E01G581500, Tel6E01G346800 ... Tel6E01G400200, Tel7E01G430500
Poaceae	Triticum dicoccoides	10	gene_TRIDC1AG052040, gene_TRIDC1BG059510 ... gene_TRIDC2AG048610, gene_TRIDC2BG051080, gene_TRIDC6AG025050, gene_TRIDC6AG030590, gene_TRIDC6BG031030, gene_TRIDC6BG037850, gene_TRIDC7AG031200, gene_TRIDC7BG023400
Poaceae	Triticum aestivum	15	TraesCS1A02G353200.1, TraesCS1B02G368600.1 ... TraesCS1D02G357000.1, TraesCS2A02G330200.1, TraesCS2B02G352000.1, TraesCS2D02G332500.1, TraesCS6A02G174100.1, TraesCS6A02G200600.1, TraesCS6B02G202700.1, TraesCS6B02G226700.2, TraesCS6D02G163200.1, TraesCS6D02G189300.1, TraesCS7A02G243900.3, TraesCS7B02G147500.1, TraesCS7D02G242500.1
Poaceae	Zea mays	8	Zm00001eb034650_P001, Zm00001eb183390_P001 ... Zm00001eb199730_P001, Zm00001eb206420_P001, Zm00001eb234640_P001, Zm00001eb245640_P002, Zm00001eb327550_P001, Zm00001eb424720_P001
Poaceae	Zoysia japonica	5	nbis-gene-18673, nbis-gene-29793, nbis-gene-33552 ... nbis-gene-44144, nbis-gene-7424
Poaceae	Zoysia macrostachya	6	Zma_g12336, Zma_g13786, Zma_g15084, Zma_g16584, Zma_g21448 ... Zma_g23212
Portulacaceae	Portulaca oleracea	5	evm.TU.LG01.10, evm.TU.LG02.548, evm.TU.LG09.2124 ... evm.TU.LG18.1088, evm.TU.LG20.783
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g17140, gene.Posoc02g22990, gene.Posoc02g23060
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_10_RagTag.137, evm.TU.Scaffold_4_RagTag.2198 ... evm.TU.Scaffold_7_RagTag.118, evm.TU.Scaffold_8_RagTag.1609
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-13925, nbisL1-mrna-19615, nbisL1-mrna-19617 ... nbisL1-mrna-8727
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-13184, nbisL1-mrna-21273, nbisL1-mrna-407 ... nbisL1-mrna-4697
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-15083, nbisL1-mrna-16573, nbisL1-mrna-22302 ... nbisL1-mrna-4949
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000018l.54, evm.TU.utg000028l.68 ... evm.TU.utg000033l.85
Rhizophoraceae	Kandelia obovata	4	Maker00001477, Maker00003575, Maker00010468, Maker00015069
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-16685, nbisL1-mrna-17477, nbisL1-mrna-8032 ... nbisL1-mrna-9397
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-14529, nbisL1-mrna-22632, nbisL1-mrna-22666 ... nbisL1-mrna-9195
Salicaceae	Populus euphratica	6	populus_peu05620, populus_peu12254, populus_peu12255 ... populus_peu26628, populus_peu26629, populus_peu28344
Solanaceae	Lycium barbarum	4	gene-LOC132616891, gene-LOC132623903, gene-LOC132636311 ... gene-LOC132638541
Solanaceae	Solanum chilense	3	SOLCI001063200, SOLCI006781900, SOLCI007178300
Solanaceae	Solanum pennellii	4	gene-LOC107005499, gene-LOC107010467, gene-LOC107010530 ... gene-LOC107025846
Tamaricaceae	Reaumuria soongarica	3	gene_13102, gene_17857, gene_8133
Tamaricaceae	Tamarix chinensis	2	TC05G2666, TC06G0433
Zosteraceae	Zostera marina	5	Zosma01g03940.v3.1, Zosma01g34400.v3.1, Zosma01g39610.v3.1 ... Zosma02g23170.v3.1, Zosma05g21150.v3.1