Basic Information
Locus ID:
Ag3G00487
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
metal ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 12370896 | 12383209 | - | Ag3G00487 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.70 | 108,715.95 Da | 49.79 | 71.68 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15566 | PHD3_NSD | 347 | 388 | 7.17507E-6 | - |
| CDD | cd15565 | PHD2_NSD | 279 | 345 | 1.79229E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 277 | 368 | 7.8E-10 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 214 | 276 | 3.2E-7 | IPR013083 |
| SMART | SM00249 | PHD_3 | 223 | 274 | 4.1 | IPR001965 |
| SMART | SM00249 | PHD_3 | 347 | 414 | 2.1 | IPR001965 |
| SMART | SM00249 | PHD_3 | 279 | 346 | 1.1 | IPR001965 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 512 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 884 | 898 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 493 | 512 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 871 | 965 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 448 | 492 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55390.1 | ENHANCED DOWNY MILDEW 2. Encodes EDM2 (enhanced downy mildew 2). The predicted protein bears typical features of transcriptional regulators. EDM2 contains two putative bipartite nuclear localization signals (NLS) two zinc-finger-like motifs, a Proline-rich region and a large aspartic acid-rich region. Both zinc-finger-like stretches resemble the PHD (plant homeodomain) finger motif. Mutations in EDM2 comprise RPP7 mediated resistance against Hyaloperonospora parasitica isolate Hiks1 (HpHiks1). EDM2 may function as a direct or indirect regulator of RPP7 expression. | 0 |
| RefSeq | XP_017248117.1 | PREDICTED: protein ENHANCED DOWNY MILDEW 2-like [Daucus carota subsp. sativus] | 0 |
| F4K3G5 | Protein ENHANCED DOWNY MILDEW 2 OS=Arabidopsis thaliana OX=3702 GN=EDM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A165YZN9 | DNMT1-RFD domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013202 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 23.606462 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 15.14511 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 16.623869 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 18.420395 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 19.179016 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 21.455458 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 22.118753 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 19.87562 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 18.016058 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 20.527754 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 21.559401 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 20.565962 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 18.344976 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 17.07913 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 9.908492 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 11.032015 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 8.32647 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.635217 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 10.862721 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 10.538706 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 12.826269 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 11.471804 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 11.897593 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 10.117557 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 10.908326 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 15.861331 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 13.523205 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 15.279761 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 13.922246 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.018395 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.455218 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.530018 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 11.476624 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 9.62787 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.899827 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 7.461667 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.271916 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 4.418694 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.262701 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.904295 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.742688 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 7.729599 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 13.269212 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 21.52117 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 19.726271 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 7.746777 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 20.6721 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 15.785731 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 14.513515 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 18.550915 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg19094, jg20159 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_12176, gene_12179, gene_20628 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah008979, Ah036086, Ah038270 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g089610 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg14556, Sbi_jg18379, Sbi_jg36777, Sbi_jg46205 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg10412, Seu_jg4709, Seu_jg4710 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00012699, GOSA_00017399 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl23492, Sgl28621, Sgl78249, Sgl80740, Sgl80744 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000010223, gene:ENSEOMG00000015788 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.2BG0001840, CQ.Regalona.r1.4BG0025240 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30155780 |
| Apiaceae | Apium graveolens | 5 | Ag11G03140, Ag2G00130, Ag2G00131, Ag3G00487, Ag6G02599 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G012410, COCNU_11G010780 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103702321, gene-LOC103713594, gene-LOC103719059 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.469.V1.1, AsparagusV1_05.2091.V1.1 |
| Asteraceae | Flaveria trinervia | 5 | Ftri15G26604, Ftri16G20018, Ftri16G33854, Ftri2G00241 ... |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G48090.1, AT5G55390.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10003648m.g.v1.0, Thhalv10012452m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g18510.v2.2, Sp6g17310.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g000310.2N, BniB02g069350.2N, BniB05g035280.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1383 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1548 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g09240 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g08750, gene.Thate09g18950 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-9065, nbisL1-mrna-9066 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1954 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00030340, Pov_00031940 |
| Plumbaginaceae | Limonium bicolor | 5 | Lb1G03444, Lb1G03445, Lb1G03450, Lb5G28300, Lb7G35255 |
| Poaceae | Echinochloa crus-galli | 10 | AH03.1418, AH08.1155, AH08.1982, BH03.1551, BH08.1132 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_6AG0521300, gene-QOZ80_6BG0473920 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0471230.1, HORVU.MOREX.r3.7HG0678920.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_004282, gene-QYE76_004283, gene-QYE76_029904 |
| Poaceae | Oryza coarctata | 7 | Oco01G011100, Oco05G003610, Oco09G006280, Oco15G011550 ... |
| Poaceae | Oryza sativa | 5 | LOC_Os01g32710.1, LOC_Os01g32720.1, LOC_Os08g24880.1 ... |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_02G138300, gene-BS78_07G180600, gene-BS78_K295200 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0404044, Pt_Chr0702700, Pt_Chr0702752 |
| Poaceae | Sporobolus alterniflorus | 9 | Chr10G003090, Chr11G015780, Chr14G006380, Chr16G012830 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel5E01G294300, Tel7E01G394600, Tel7E01G429400 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC5AG028640, gene_TRIDC5BG030220 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS5A02G175300.3, TraesCS5B02G172800.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb094550_P001, Zm00001eb199620_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-28761, nbis-gene-28762, nbis-gene-28763 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29695 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.Contig10.6, evm.TU.LG06.813, evm.TU.LG09.1790 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g09970 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1606 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-20351, nbisL1-mrna-20553, nbisL1-mrna-8724 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-410 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15086 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.881, evm.TU.utg000018l.57 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003322, Maker00009225 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-22350, nbisL1-mrna-9400 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-22669, nbisL1-mrna-4662 |
| Salicaceae | Populus euphratica | 4 | populus_peu05090, populus_peu05091, populus_peu05100 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132606556, gene-LOC132628016 |
| Solanaceae | Solanum chilense | 2 | SOLCI003128000, SOLCI005420600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002274, gene-LOC107032693 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_16920, gene_2212 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G0230, TC06G0426 |
| Zosteraceae | Zostera marina | 1 | Zosma03g14480.v3.1 |