Basic Information
Locus ID:
Ag3G00483
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 12336915 | 12337343 | - | Ag3G00483 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 16,170.81 Da | 61.90 | 61.13 | -0.89 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 31 | 132 | 1.5E-7 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 142 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 142 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10850.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_017215719.1 | PREDICTED: inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630 [Daucus carota subsp. sativus] | 0 |
| Q84MA9 | Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630 OS=Arabidopsis thaliana OX=3702 GN=At1g60630 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164SNA7 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023505 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.158917 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.373792 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.765287 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.679072 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.628913 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.067956 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.12523 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.504446 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.009458 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 1.43301 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.692711 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.101143 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.155571 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.246306 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.066226 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.76821 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.204227 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.229455 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.58196 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.733159 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.200659 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.69945 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.406286 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.167636 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.004067 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 4.996623 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.360193 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.594637 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.13296 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 3.194275 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 1.185473 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.999935 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg5070, jg7417, jg9723 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25874 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah037308 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g206650 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11827, Sbi_jg46585 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21062 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00021040 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl68917 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015662, gene:ENSEOMG00000039143 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0007430, CQ.Regalona.r1.9BG0014590 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30219790 |
| Apiaceae | Apium graveolens | 3 | Ag3G00483, Ag5G01885, Ag8G01936 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G009420, COCNU_09G006110 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103723877, gene-LOC120104244 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.1015.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G15674, Ftri3G22077 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G10850.1, AT1G60630.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007013m.g.v1.0, Thhalv10023334m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g09550.v2.2, Sp2g04090.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g059740.2N, BniB04g028780.2N, BniB07g046550.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1617 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1740 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g07920 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g16650 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5561 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.969 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00025303 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb6G31304, Lb7G34112 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.4043, BH07.3857, CH07.3922 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0151610, gene-QOZ80_2BG0206980 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0633560.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_056870 |
| Poaceae | Oryza coarctata | 2 | Oco03G026210, Oco04G026630 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g58390.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G329600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0600008, Pt_Chr0600021 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G026930, Chr13G000220 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G776200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG061200, gene_TRIDC6BG071310 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G417300.1, TraesCS6B02G472100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb259460_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-39736 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17480 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2217, evm.TU.LG23.449 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g14350 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_17_RagTag.694 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23380 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14188 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20013 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000013l.372 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004479 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10766 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14353 |
| Salicaceae | Populus euphratica | 2 | populus_peu07306, populus_peu21299 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132614727 |
| Solanaceae | Solanum chilense | 1 | SOLCI006296400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017961 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.683_chr01_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0014 |
| Zosteraceae | Zostera marina | 1 | Zosma05g30870.v3.1 |