halophFGD

Basic Information

Locus ID: Ag3G00452

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: transcription factor

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	11737013	11738415	+	Ag3G00452

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.66	33,441.24 Da	56.64	84.56	-0.59

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF14144	Seed dormancy control	59	123	6.5E-26	IPR025422
ProSiteProfiles	PS51806	DOG1 domain profile.	9	277	31.77352	IPR025422
Coils	Coil	Coil	20	47	-	-

Gene Ontology

Biological Process:

GO:0006351 (DNA-templated transcription)

Molecular Function:

GO:0043565 (sequence-specific DNA binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G14880.2
RefSeq	XP_017245125.1	PREDICTED: transcription factor HBP-1b(c38)-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9SN45	Protein DOG1-like 2 OS=Arabidopsis thaliana OX=3702 GN=DOGL2 PE=4 SV=2
TrEMBL	A0A165Z0F0	DOG1 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013177 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	4.087795	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	2.971232	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	2.120183	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	1.918377	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	2.437047	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	3.216827	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	2.610087	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	4.286394	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.519395	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.240844	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	1.089473	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	1.783393	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.943466	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.490367	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	2.191113	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	1.705078	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.050873	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.676697	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	3.989229	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	4.418007	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	1.762114	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.399222	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	1.235986	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.07064	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.326969	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.373422	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.18526	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.079282	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	15.4755		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	7.599816		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	8.250504		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.338417		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.763894		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.783216		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	7.917705		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.061404		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.869244		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	1.239737	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	7.402337	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	29.906502	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	23.91848	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	55.683109	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	7.725273	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	8.244511	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	15.67872	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	3.540879	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	1.547398	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.945354	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.733063	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg19136, jg22156, jg22158, jg24960, jg24961
Aizoaceae	Mesembryanthemum crystallinum	7	gene_10313, gene_11882, gene_2262, gene_2263, gene_442 ... gene_7544, gene_8537
Amaranthaceae	Atriplex hortensis	8	Ah005490, Ah005491, Ah005493, Ah005495, Ah005496, Ah008970 ... Ah008971, Ah017049
Amaranthaceae	Beta vulgaris	4	BVRB_4g078280, BVRB_4g078290, BVRB_5g102840, BVRB_8g180960
Amaranthaceae	Salicornia bigelovii	14	Sbi_jg17707, Sbi_jg17709, Sbi_jg19174, Sbi_jg23739 ... Sbi_jg37588, Sbi_jg40404, Sbi_jg45390, Sbi_jg4749, Sbi_jg50401, Sbi_jg62379, Sbi_jg62380, Sbi_jg62382, Sbi_jg7323, Sbi_jg7583
Amaranthaceae	Salicornia europaea	9	Seu_jg11252, Seu_jg12451, Seu_jg12690, Seu_jg1978, Seu_jg947 ... Seu_jg5432, Seu_jg952, Seu_jg953, Seu_jg954
Amaranthaceae	Suaeda aralocaspica	6	GOSA_00001242, GOSA_00001421, GOSA_00006724, GOSA_00007277 ... GOSA_00007281, GOSA_00011549
Amaranthaceae	Suaeda glauca	25	Sgl12689, Sgl15599, Sgl17935, Sgl23324, Sgl23973, Sgl23974 ... Sgl23979, Sgl28393, Sgl28433, Sgl29152, Sgl29153, Sgl29158, Sgl34993, Sgl35127, Sgl35137, Sgl40511, Sgl40519, Sgl45462, Sgl50246, Sgl51702, Sgl51937, Sgl51938, Sgl57007, Sgl57230, Sgl57231
Amaranthaceae	Chenopodium album	16	gene:ENSEOMG00000002471, gene:ENSEOMG00000003306 ... gene:ENSEOMG00000007129, gene:ENSEOMG00000009296, gene:ENSEOMG00000011024, gene:ENSEOMG00000011419, gene:ENSEOMG00000025265, gene:ENSEOMG00000025814, gene:ENSEOMG00000026324, gene:ENSEOMG00000028887, gene:ENSEOMG00000030516, gene:ENSEOMG00000034142, gene:ENSEOMG00000041447, gene:ENSEOMG00000041681, gene:ENSEOMG00000042535, gene:ENSEOMG00000043557
Amaranthaceae	Chenopodium quinoa	8	CQ.Regalona.r1.2BG0006020, CQ.Regalona.r1.4AG0005870 ... CQ.Regalona.r1.4AG0005890, CQ.Regalona.r1.4BG0006040, CQ.Regalona.r1.4BG0006050, CQ.Regalona.r1.5BG0010830, CQ.Regalona.r1.8AG0007170, CQ.Regalona.r1.8BG0008100
Anacardiaceae	Pistacia vera	4	pistato.v30042500, pistato.v30072160, pistato.v30162590 ... pistato.v30267180
Apiaceae	Apium graveolens	12	Ag11G03187, Ag2G00018, Ag2G00019, Ag2G00020, Ag2G00689 ... Ag2G01111, Ag3G00452, Ag3G01863, Ag7G00825, Ag8G00083, Ag8G01750, AgUnG01061
Arecaceae	Cocos nucifera	4	COCNU_04G003040, COCNU_04G003050, COCNU_04G014140 ... COCNU_06G005580
Arecaceae	Phoenix dactylifera	4	gene-LOC103706883, gene-LOC103709645, gene-LOC103718906 ... gene-LOC103720042
Asparagaceae	Asparagus officinalis	1	AsparagusV1_01.444.V1.1
Asteraceae	Flaveria trinervia	11	Ftri12G03135, Ftri12G25162, Ftri13G08627, Ftri14G25545 ... Ftri14G26179, Ftri15G12732, Ftri15G20374, Ftri6G08617, Ftri7G15618, Ftri9G07682, FtriNA04671
Brassicaceae	Arabidopsis thaliana	8	AT1G09950.1, AT1G58330.1, AT3G14880.1, AT4G18650.1 ... AT4G18660.1, AT4G18680.1, AT4G18690.1, AT5G45830.1
Brassicaceae	Eutrema salsugineum	8	Thhalv10001138m.g.v1.0, Thhalv10005017m.g.v1.0 ... Thhalv10008665m.g.v1.0, Thhalv10022387m.g.v1.0, Thhalv10025925m.g.v1.0, Thhalv10027005m.g.v1.0, Thhalv10027258m.g.v1.0, Thhalv10027388m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp1g08610.v2.2, Sp2g10750.v2.2, Sp3g13090.v2.2 ... Sp7g17390.v2.2, Sp7g17400.v2.2
Brassicaceae	Brassica nigra	8	BniB01g050150.2N, BniB02g005090.2N, BniB02g062780.2N ... BniB02g071790.2N, BniB04g016040.2N, BniB04g029690.2N, BniB05g017680.2N, BniB05g017690.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq01G0943
Casuarinaceae	Casuarina glauca	1	Cgl01G1061
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-4875, nbisL1-mrna-914
Nitrariaceae	Nitraria sibirica	6	evm.TU.LG01.1001, evm.TU.LG02.913, evm.TU.LG05.1441 ... evm.TU.LG06.274, evm.TU.LG12.811, evm.TU.LG12.812
Plantaginaceae	Plantago ovata	21	Pov_00002735, Pov_00005571, Pov_00005575, Pov_00009685 ... Pov_00009687, Pov_00013589, Pov_00014110, Pov_00021316, Pov_00021589, Pov_00021592, Pov_00021594, Pov_00022794, Pov_00023388, Pov_00029533, Pov_00033416, Pov_00034796, Pov_00037833, Pov_00037834, Pov_00038373, Pov_00040529, Pov_00041573
Plumbaginaceae	Limonium bicolor	3	Lb2G09207, Lb2G09208, Lb4G23262
Poaceae	Echinochloa crus-galli	16	AH02.1426, AH02.2676, AH02.3328, AH02.571, AH05.1422 ... BH02.1501, BH02.3640, BH02.576, BH04.2075, BH05.1592, BH09.1670, CH01.2449, CH02.1635, CH02.652, CH05.1794, CH09.1746
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_1AG0010580, gene-QOZ80_1AG0014270 ... gene-QOZ80_1AG0033940, gene-QOZ80_1BG0059080, gene-QOZ80_1BG0063090, gene-QOZ80_1BG0084010, gene-QOZ80_5AG0363430, gene-QOZ80_5BG0411520
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0086840.1.CDS1 ... HORVU.MOREX.r3.2HG0199880.1.CDS1, HORVU.MOREX.r3.3HG0235930.1, HORVU.MOREX.r3.3HG0290160.1.CDS1
Poaceae	Lolium multiflorum	5	gene-QYE76_004063, gene-QYE76_013909, gene-QYE76_050097 ... gene-QYE76_055110, gene-QYE76_055144
Poaceae	Oryza coarctata	8	Oco01G002340, Oco01G008990, Oco01G020740, Oco02G002290 ... Oco02G009170, Oco02G021310, Oco09G016630, Oco10G016460
Poaceae	Oryza sativa	3	LOC_Os01g06560.1, LOC_Os01g20030.1, LOC_Os05g48650.1
Poaceae	Paspalum vaginatum	5	gene-BS78_03G056900, gene-BS78_03G133700 ... gene-BS78_03G282800, gene-BS78_06G152100, gene-BS78_09G233200
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0205323, Pt_Chr0205401, Pt_Chr0602674
Poaceae	Sporobolus alterniflorus	5	Chr01G015520, Chr02G021770, Chr02G023080, Chr12G021250 ... Chr25G008860
Poaceae	Thinopyrum elongatum	4	Tel1E01G642700, Tel2E01G823300, Tel3E01G180000 ... Tel3E01G483200
Poaceae	Triticum dicoccoides	9	gene_TRIDC1AG057720, gene_TRIDC1BG066460 ... gene_TRIDC2AG001100, gene_TRIDC2AG068540, gene_TRIDC2BG074050, gene_TRIDC3AG012610, gene_TRIDC3AG043770, gene_TRIDC3BG016940, gene_TRIDC3BG049750
Poaceae	Triticum aestivum	12	TraesCS1A02G392200.1.cds1, TraesCS1B02G420300.1.cds1 ... TraesCS1D02G400300.1.cds1, TraesCS2A02G010800.1.cds1, TraesCS2A02G486100.1.cds1, TraesCS2B02G512700.1.cds1, TraesCS3A02G103500.1, TraesCS3A02G306200.1.cds1, TraesCS3B02G120900.1, TraesCS3B02G330400.1.cds1, TraesCS3D02G105800.1, TraesCS3D02G295800.1.cds1
Poaceae	Zea mays	5	Zm00001eb130290_P001, Zm00001eb152510_P001 ... Zm00001eb223390_P002, Zm00001eb295650_P001, Zm00001eb339990_P001
Poaceae	Zoysia japonica	7	nbis-gene-13068, nbis-gene-13492, nbis-gene-13684 ... nbis-gene-24873, nbis-gene-31126, nbis-gene-55567, nbis-gene-6902
Poaceae	Zoysia macrostachya	5	Zma_g11193, Zma_g11194, Zma_g7636, Zma_g7873, Zma_g9995
Portulacaceae	Portulaca oleracea	10	evm.TU.LG01.431, evm.TU.LG02.795, evm.TU.LG04.330 ... evm.TU.LG06.1281, evm.TU.LG09.1966, evm.TU.LG10.503, evm.TU.LG11.626, evm.TU.LG12.1732, evm.TU.LG17.511, evm.TU.LG26.493
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_13_RagTag.297
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-19336, nbisL1-mrna-19338, nbisL1-mrna-22065 ... nbisL1-mrna-24035
Rhizophoraceae	Kandelia candel	2	add.evm.TU.utg000016l.294, add.evm.TU.utg000027l.76
Salicaceae	Populus euphratica	4	populus_peu00606, populus_peu09932, populus_peu13718 ... populus_peu22878
Solanaceae	Lycium barbarum	10	gene-LOC132606995, gene-LOC132619047, gene-LOC132619255 ... gene-LOC132621877, gene-LOC132623160, gene-LOC132623511, gene-LOC132624520, gene-LOC132624839, gene-LOC132638575, gene-LOC132639984
Solanaceae	Solanum chilense	12	SOLCI001500200, SOLCI001823300, SOLCI002531800 ... SOLCI002532000, SOLCI002604000, SOLCI002834500, SOLCI004458700, SOLCI005478400, SOLCI005478500, SOLCI006211200, SOLCI006258200, SOLCI007529700
Solanaceae	Solanum pennellii	12	gene-LOC107002036, gene-LOC107005953, gene-LOC107009570 ... gene-LOC107009614, gene-LOC107010348, gene-LOC107010384, gene-LOC107010561, gene-LOC107010747, gene-LOC107014256, gene-LOC107020678, gene-LOC107025642, gene-LOC107030777
Tamaricaceae	Reaumuria soongarica	7	STRG.22017_chr08_+, STRG.24916_chr08_-, gene_11327 ... gene_11967, gene_17992, gene_4426, gene_9749
Tamaricaceae	Tamarix chinensis	1	TC02G1498
Zosteraceae	Zostera marina	1	Zosma02g21440.v3.1