Basic Information
Locus ID:
Ag3G00440
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the TUB family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 10959199 | 10962494 | - | Ag3G00440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.49 | 43,618.05 Da | 63.78 | 70.84 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01167 | Tub family | 127 | 386 | 6.0E-96 | IPR000007 |
| Pfam | PF00646 | F-box domain | 64 | 110 | 2.9E-5 | IPR001810 |
| SUPERFAMILY | SSF54518 | Tubby C-terminal domain-like | 115 | 391 | 7.06E-90 | IPR025659 |
| Gene3D | G3DSA:1.20.1280.50 | - | 57 | 110 | 1.5E-5 | - |
| Gene3D | G3DSA:3.20.90.10 | Tubby Protein; Chain A | 120 | 391 | 7.9E-87 | IPR025659 |
| ProSitePatterns | PS01201 | Tub family signature 2. | 376 | 391 | - | IPR018066 |
| ProSitePatterns | PS01200 | Tub family signature 1. | 319 | 332 | - | IPR018066 |
| PRINTS | PR01573 | Tubby superfamily signature | 301 | 318 | 2.0E-67 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 244 | 271 | 2.0E-67 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 348 | 367 | 2.0E-67 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 195 | 219 | 2.0E-67 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 319 | 335 | 2.0E-67 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 369 | 391 | 2.0E-67 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 179 | 195 | 2.0E-67 | IPR000007 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 53 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53320.1 | tubby like protein 7. Member of TLP family | 0 |
| RefSeq | XP_017247428.1 | PREDICTED: tubby-like F-box protein 7 [Daucus carota subsp. sativus] | 0 |
| Q93VI8 | Tubby-like F-box protein 7 OS=Arabidopsis thaliana OX=3702 GN=TULP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B7BR09 | Tubby-like F-box protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_039054 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 22.019396 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 20.43125 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 18.016306 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 17.387676 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 19.032928 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 20.674128 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 20.495296 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 18.624151 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 54.18177 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 58.82032 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 63.99509 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 51.662632 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 48.790932 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 52.905087 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 27.217236 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 23.83231 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 19.926712 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 29.829605 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 20.7339 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 40.639793 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 35.29557 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 27.847528 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 24.793324 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 28.629475 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 25.397024 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 25.405895 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 22.447445 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 19.924089 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 24.743891 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 12.884158 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 12.37354 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 13.773519 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 49.280342 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 39.049316 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 47.770405 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 38.099262 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 29.661842 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 36.66296 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 36.333168 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 28.289923 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 16.593975 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 35.864155 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 49.339947 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 39.052532 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 33.647621 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 35.632942 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 29.747274 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 36.719475 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 26.033644 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 24.208086 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology